View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4511-Insertion-5 (Length: 397)
Name: NF4511-Insertion-5
Description: NF4511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4511-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 185 - 365
Target Start/End: Original strand, 39507245 - 39507425
Alignment:
| Q |
185 |
tcagctctttgggcactgtgacaacttttctacttgcttgttttggttatcttgtccattgaatgaccatttatgttttgtaaattgtttagggctacaa |
284 |
Q |
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| T |
39507245 |
tcagctcttttggcactgtgacaacttttcaacttgcttgttttgcttatcttgtccactgaataatcatttttgtttctctaattatttagggctacaa |
39507344 |
T |
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| Q |
285 |
tgttctcaaaagacttgctgatgtgattgataaatctgataagaaaactcttgaggaattaagtgggtaagaaattttagc |
365 |
Q |
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| T |
39507345 |
tgttctcaaaagacttgctgatgtgattgataagtctgataagaatgctctagagcaattaagcgggtaagaaattttagc |
39507425 |
T |
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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 280 - 335
Target Start/End: Original strand, 8880520 - 8880575
Alignment:
| Q |
280 |
tacaatgttctcaaaagacttgctgatgtgattgataaatctgataagaaaactct |
335 |
Q |
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| T |
8880520 |
tacaatgttctcaaaagacttgctgatgtgattgataaatttgataggaaagctct |
8880575 |
T |
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