View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4511-Insertion-6 (Length: 208)

Name: NF4511-Insertion-6
Description: NF4511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4511-Insertion-6
NF4511-Insertion-6
[»] chr3 (12 HSPs)
chr3 (8-142)||(50911860-50911994)
chr3 (11-208)||(48840637-48840833)
chr3 (13-139)||(38024869-38024995)
chr3 (13-139)||(38031321-38031447)
chr3 (19-139)||(50909986-50910106)
chr3 (13-142)||(38043923-38044052)
chr3 (13-139)||(38028760-38028886)
chr3 (13-139)||(38040075-38040201)
chr3 (13-139)||(55084806-55084932)
chr3 (13-138)||(38036788-38036913)
chr3 (13-139)||(50904786-50904912)
chr3 (13-110)||(38033802-38033899)
[»] chr8 (3 HSPs)
chr8 (13-139)||(21607290-21607416)
chr8 (13-139)||(21604748-21604874)
chr8 (53-139)||(21634603-21634689)
[»] chr4 (53 HSPs)
chr4 (13-139)||(17970319-17970445)
chr4 (37-139)||(27503966-27504068)
chr4 (22-139)||(27415650-27415767)
chr4 (15-139)||(27412686-27412810)
chr4 (37-139)||(27468321-27468423)
chr4 (37-139)||(27514935-27515037)
chr4 (37-132)||(27475580-27475675)
chr4 (37-139)||(27524568-27524670)
chr4 (10-131)||(27502809-27502930)
chr4 (23-139)||(27563340-27563456)
chr4 (19-139)||(27570043-27570163)
chr4 (19-134)||(27425838-27425953)
chr4 (20-139)||(27431142-27431261)
chr4 (37-139)||(27420452-27420554)
chr4 (36-128)||(27508895-27508987)
chr4 (24-139)||(27423253-27423368)
chr4 (20-139)||(27444788-27444907)
chr4 (16-129)||(27489983-27490096)
chr4 (22-139)||(27585717-27585834)
chr4 (13-132)||(27498435-27498554)
chr4 (20-139)||(27557516-27557635)
chr4 (37-139)||(27523397-27523499)
chr4 (37-139)||(27526106-27526208)
chr4 (37-133)||(27411456-27411552)
chr4 (37-133)||(27414304-27414400)
chr4 (19-134)||(27497321-27497436)
chr4 (13-139)||(27469480-27469606)
chr4 (37-139)||(27479945-27480047)
chr4 (13-139)||(27487003-27487129)
chr4 (13-131)||(27501337-27501455)
chr4 (37-139)||(27505696-27505798)
chr4 (13-139)||(27513770-27513896)
chr4 (37-133)||(27424514-27424610)
chr4 (37-133)||(27567299-27567395)
chr4 (37-140)||(27485936-27486039)
chr4 (42-133)||(27540056-27540147)
chr4 (37-139)||(27476731-27476833)
chr4 (61-139)||(27502129-27502207)
chr4 (15-113)||(27527183-27527281)
chr4 (43-133)||(27559240-27559330)
chr4 (75-132)||(27419072-27419129)
chr4 (22-131)||(27565953-27566062)
chr4 (75-132)||(27571705-27571762)
chr4 (19-139)||(27506724-27506844)
chr4 (13-133)||(27556379-27556499)
chr4 (37-132)||(27478884-27478979)
chr4 (13-131)||(27507815-27507933)
chr4 (58-131)||(27554374-27554447)
chr4 (37-72)||(27945687-27945722)
chr4 (13-139)||(27500332-27500458)
chr4 (22-139)||(27460507-27460624)
chr4 (82-139)||(27466910-27466967)
chr4 (22-139)||(27516603-27516720)
[»] chr2 (1 HSPs)
chr2 (13-139)||(3073589-3073715)
[»] chr5 (2 HSPs)
chr5 (19-139)||(1756751-1756871)
chr5 (15-139)||(1754710-1754834)


Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 8 - 142
Target Start/End: Complemental strand, 50911994 - 50911860
Alignment:
Q  8 acaagatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcaccc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  50911994 acaagatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagcagaggaagaatttggatatgatcaccc 50911895  T
Q  108 aatgggtggcctaacaattccttgcacagaaggtg 142  Q
    |||||||||||||||||||||||||||||||||||    
T  50911894 aatgggtggcctaacaattccttgcacagaaggtg 50911860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 11 - 208
Target Start/End: Complemental strand, 48840833 - 48840637
Alignment:
Q  11 agatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaat 110  Q
    ||||||| || ||||| ||||||| | |||||||||||||||| ||||||||||||||||||||| |||  ||| ||||||||||||||||||| |||||    
T  48840833 agatgaagcgatttgtaatccccatgccatacttgaaccaagcctcatttcaagacttgttgagt-aagtggagaaagaatttggatatgatcatccaat 48840735  T
Q  111 gggtggcctaacaattccttgcacagaaggtgnnnnnnnccacattactgctagcttcaatgggctataattctaaaactgcaatagactgacataga 208  Q
    ||||||||| ||||||||||||||||||| ||        |||||||||| ||||||||||||||||||| |||||||||| || | |||||||||||    
T  48840734 gggtggcctcacaattccttgcacagaagatgttttcttgcacattactgttagcttcaatgggctataaatctaaaactggaagatactgacataga 48840637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 38024995 - 38024869
Alignment:
Q  13 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgg 112  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  38024995 atgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgg 38024896  T
Q  113 gtggcctaacaattccttgcacagaag 139  Q
    ||||||| || ||||||||||||||||    
T  38024895 gtggcctcacgattccttgcacagaag 38024869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 38031447 - 38031321
Alignment:
Q  13 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgg 112  Q
    ||||| |||||||| ||||||| ||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  38031447 atgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgg 38031348  T
Q  113 gtggcctaacaattccttgcacagaag 139  Q
    ||||||| || ||||||||||||||||    
T  38031347 gtggcctcacgattccttgcacagaag 38031321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 50909986 - 50910106
Alignment:
Q  19 cggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcc 118  Q
    |||||||| ||||||| |||||||||||||||||||||||||||| ||||||||| |||||  ||||||||||||||||||||||| |||||||||||||    
T  50909986 cggtttgttatccccatgtcatacttgaaccaagcttcatttcaaaacttgttgaatcaagtggaggaagaatttggatatgatcatccaatgggtggcc 50910085  T
Q  119 taacaattccttgcacagaag 139  Q
    | |||||||||||||||||||    
T  50910086 tcacaattccttgcacagaag 50910106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 142
Target Start/End: Original strand, 38043923 - 38044052
Alignment:
Q  13 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgg 112  Q
    ||||| |||||||||||||| | |||||||||||| ||| |||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  38043923 atgaagcggtttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatccaatgg 38044022  T
Q  113 gtggcctaacaattccttgcacagaaggtg 142  Q
    | ||||| |||||||||||||| |||||||    
T  38044023 gcggcctcacaattccttgcaccgaaggtg 38044052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 38028886 - 38028760
Alignment:
Q  13 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgg 112  Q
    ||||| || ||||| ||||||| |||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||| || |||||||    
T  38028886 atgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacctgttgagtcaagccgaggaagaatttggatatgaccatccaatgg 38028787  T
Q  113 gtggcctaacaattccttgcacagaag 139  Q
    | ||||| |||||||||||||||||||    
T  38028786 gcggcctcacaattccttgcacagaag 38028760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 38040201 - 38040075
Alignment:
Q  13 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgg 112  Q
    ||||| || ||||| ||||||| |||||||||||||||||||||||||||| || ||||||||||||| ||||||||||| |||||||| || |||||||    
T  38040201 atgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacctgttgagtcaagccgaggaagaattcggatatgaccatccaatgg 38040102  T
Q  113 gtggcctaacaattccttgcacagaag 139  Q
    | ||||| |||||||||||||||||||    
T  38040101 gcggcctcacaattccttgcacagaag 38040075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 55084806 - 55084932
Alignment:
Q  13 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgg 112  Q
    ||||| |||||||||||||| | ||| |||||||||||| | ||||||||||||||||||||||  || ||||||||||||||||| ||||| |||||||    
T  55084806 atgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtcgggcggaggaagaatttggatacgatcatccaatgg 55084905  T
Q  113 gtggcctaacaattccttgcacagaag 139  Q
    ||||||| |||||||||||||||||||    
T  55084906 gtggcctcacaattccttgcacagaag 55084932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 38036913 - 38036788
Alignment:
Q  13 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgg 112  Q
    ||||||||||||||  |||||| | |||||||||||||||||||||||||| | |||||||||||||| ||||||||||| |||||||| || |||||||    
T  38036913 atgaaacggtttgttgtccccatgccatacttgaaccaagcttcatttcaaaatttgttgagtcaagccgaggaagaattcggatatgaccatccaatgg 38036814  T
Q  113 gtggcctaacaattccttgcacagaa 138  Q
    | ||||| ||||||||||||||||||    
T  38036813 gcggcctcacaattccttgcacagaa 38036788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 50904912 - 50904786
Alignment:
Q  13 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgg 112  Q
    ||||| |||||||||||||  | ||| |||||||||||| |||||||||||||||||||||||| ||||||||| ||||| ||||||||||| |||||||    
T  50904912 atgaagcggtttgtgatccatatgtcctacttgaaccaaacttcatttcaagacttgttgagtcgagcagaggatgaattcggatatgatcatccaatgg 50904813  T
Q  113 gtggcctaacaattccttgcacagaag 139  Q
    ||||||| || |||||||||| |||||    
T  50904812 gtggcctcaccattccttgcagagaag 50904786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 38033899 - 38033802
Alignment:
Q  13 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaat 110  Q
    ||||| |||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| || |||||    
T  38033899 atgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaatttggatatgaccatccaat 38033802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 7e-42; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 21607416 - 21607290
Alignment:
Q  13 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgg 112  Q
    ||||| |||||||| ||||||| |||||||||||||| |||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  21607416 atgaagcggtttgttatccccatgtcatacttgaaccgagcttcctttcaaaacttattgagtcaagcagaggaagaatttggatatgatcacccaatgg 21607317  T
Q  113 gtggcctaacaattccttgcacagaag 139  Q
    ||||||| ||  |||||||||||||||    
T  21607316 gtggcctcacggttccttgcacagaag 21607290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 21604874 - 21604748
Alignment:
Q  13 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgg 112  Q
    ||||| || ||||| ||||||| |||||||||||||||||||||||||||| || ||||||||||||  ||||||||||| |||||||| || |||||||    
T  21604874 atgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacatgttgagtcaagacgaggaagaattaggatatgaccatccaatgg 21604775  T
Q  113 gtggcctaacaattccttgcacagaag 139  Q
    | ||||| |||||||||||||||||||    
T  21604774 gcggcctcacaattccttgcacagaag 21604748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 21634603 - 21634689
Alignment:
Q  53 cttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacagaag 139  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||||| | |||||| ||| | |||||||||||||| ||||    
T  21634603 cttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatcgaatgggcggcttcacaattccttgcaccgaag 21634689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 53)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 17970319 - 17970445
Alignment:
Q  13 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgg 112  Q
    ||||| |||||||||||||| | |||||||||||||||| ||||||||||| ||||| ||||||  |||||||||||||| ||||| ||||| |||||||    
T  17970319 atgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgg 17970418  T
Q  113 gtggcctaacaattccttgcacagaag 139  Q
    ||||||| |||||||||||||||||||    
T  17970419 gtggcctcacaattccttgcacagaag 17970445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 27503966 - 27504068
Alignment:
Q  37 tcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacag 136  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| || ||||||||||| |    
T  27503966 tcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcaccg 27504065  T
Q  137 aag 139  Q
    |||    
T  27504066 aag 27504068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 27415650 - 27415767
Alignment:
Q  22 tttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaa 121  Q
    |||||||||||||  ||||||||||||||| | || ||||||||||||||||||||||| |||||||| ||||||||||||||  | ||||||||||| |    
T  27415650 tttgtgatccccatatcatacttgaaccaaccatcgtttcaagacttgttgagtcaagctgaggaagagtttggatatgatcattccatgggtggcctca 27415749  T
Q  122 caattccttgcacagaag 139  Q
    | ||||||||||||||||    
T  27415750 ccattccttgcacagaag 27415767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 27412686 - 27412810
Alignment:
Q  15 gaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggt 114  Q
    |||||||||||||||||| |  ||||||||||||||| | | |||||||||||| ||||||||||| || ||||| |||||||||||||| |||||||||    
T  27412686 gaaacggtttgtgatcccaatatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggt 27412785  T
Q  115 ggcctaacaattccttgcacagaag 139  Q
    ||||| || ||||||||||| ||||    
T  27412786 ggcctcaccattccttgcacggaag 27412810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 37 - 139
Target Start/End: Complemental strand, 27468423 - 27468321
Alignment:
Q  37 tcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacag 136  Q
    |||||||| |||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| || ||||||||||| || ||||||||||| |    
T  27468423 tcatacttaaaccaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgcacgg 27468324  T
Q  137 aag 139  Q
    |||    
T  27468323 aag 27468321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 27514935 - 27515037
Alignment:
Q  37 tcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacag 136  Q
    ||||||||||| ||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| || ||||||||||| || |||||||| ||||    
T  27514935 tcatacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggcctcaccattccttgtacag 27515034  T
Q  137 aag 139  Q
    |||    
T  27515035 aag 27515037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 27475675 - 27475580
Alignment:
Q  37 tcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgc 132  Q
    ||||||||||| ||| |||||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||| || |||||||||    
T  27475675 tcatacttgaatcaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgc 27475580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 27524568 - 27524670
Alignment:
Q  37 tcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacag 136  Q
    ||||| ||||||||| ||||||||||||||||||||| |||||| |||||||| |||||||||||||| |||||||||||||| || ||||| ||||| |    
T  27524568 tcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccgtgcaccg 27524667  T
Q  137 aag 139  Q
    |||    
T  27524668 aag 27524670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 10 - 131
Target Start/End: Complemental strand, 27502930 - 27502809
Alignment:
Q  10 aagatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaa 109  Q
    |||||||| ||||||||||| || | |||||| ||||| ||| ||||||||||||||||| |||| ||||| | |||||||||||||||||| || ||||    
T  27502930 aagatgaagcggtttgtgattccaatgtcatatttgaatcaaacttcatttcaagacttgctgagccaagctgtggaagaatttggatatgaccatccaa 27502831  T
Q  110 tgggtggcctaacaattccttg 131  Q
    ||||||| || || ||||||||    
T  27502830 tgggtggtcttactattccttg 27502809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 27563456 - 27563340
Alignment:
Q  23 ttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaac 122  Q
    |||||||||||   ||||||||||||||| | |  |||||||| ||| |||||||||| || ||||| |||||||||||||| |||||||||||||| ||    
T  27563456 ttgtgatccccgtatcatacttgaaccaaacattgtttcaagatttgctgagtcaagccgaagaagagtttggatatgatcatccaatgggtggcctcac 27563357  T
Q  123 aattccttgcacagaag 139  Q
    |||||||||||| ||||    
T  27563356 aattccttgcactgaag 27563340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 27570163 - 27570043
Alignment:
Q  19 cggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcc 118  Q
    |||| ||||||||||   |||||||| | |||| ||||||||||||||||| |||||||||| |||||||| || ||||||||||| || ||||||||||    
T  27570163 cggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggcc 27570064  T
Q  119 taacaattccttgcacagaag 139  Q
    | || ||||||||||| ||||    
T  27570063 tcaccattccttgcaccgaag 27570043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 27425838 - 27425953
Alignment:
Q  19 cggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcc 118  Q
    |||| ||||||||| |  ||||||||||||||| | |||||||||||||| |||||||||   |||||||| |||||||||||||| || ||||||||||    
T  27425838 cggtatgtgatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcc 27425937  T
Q  119 taacaattccttgcac 134  Q
    | || |||||||||||    
T  27425938 tcaccattccttgcac 27425953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 27431261 - 27431142
Alignment:
Q  20 ggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcct 119  Q
    ||||||||||||| |  ||||||||||||||| | ||||||||||| ||||||| |||||| |||||| ||||||||||||| || ||||  ||||| ||    
T  27431261 ggtttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatccaaccggtggtct 27431162  T
Q  120 aacaattccttgcacagaag 139  Q
     ||||||||||||| |||||    
T  27431161 cacaattccttgcagagaag 27431142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 27420452 - 27420554
Alignment:
Q  37 tcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacag 136  Q
    |||||||||| |||| |||||||||||| |||| |||||||||  |||||||| |||||||||||||| || ||||||||||| || ||||||||||| |    
T  27420452 tcatacttgagccaaccttcatttcaaggcttgctgagtcaagttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgcacgg 27420551  T
Q  137 aag 139  Q
    |||    
T  27420552 aag 27420554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 36 - 128
Target Start/End: Original strand, 27508895 - 27508987
Alignment:
Q  36 gtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattcc 128  Q
    |||||| ||||||||| ||||||||||||||||||||| ||| || |||||||| |||||||||||||| |||| ||||||||| || |||||    
T  27508895 gtcatatttgaaccaaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatcatccaacgggtggcctcaccattcc 27508987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 27423253 - 27423368
Alignment:
Q  24 tgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaaca 123  Q
    |||||||| ||  ||||||||||||||| ||||||||||||| |||||||||||||| |||||||| ||||| ||  |||| || ||||||||||| ||     
T  27423253 tgtgatccgcatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcacc 27423352  T
Q  124 attccttgcacagaag 139  Q
     |||||||||| ||||    
T  27423353 gttccttgcacggaag 27423368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 139
Target Start/End: Complemental strand, 27444907 - 27444788
Alignment:
Q  20 ggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcct 119  Q
    ||||||||||||| |  |||||||||| |||| | ||||||||||| || |||| |||||| |||||| |||| |||||||| || ||||||||||| ||    
T  27444907 ggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtggtct 27444808  T
Q  120 aacaattccttgcacagaag 139  Q
     ||||||||||||| |||||    
T  27444807 cacaattccttgcagagaag 27444788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 27489983 - 27490096
Alignment:
Q  16 aaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtg 115  Q
    |||||||||||  ||||   ||||||||| ||| || | ||||||||||| ||||||| |||||| |||||||| |||||||||||||| ||||||||||    
T  27489983 aaacggtttgtagtccctgtgtcatacttaaacaaaccatcatttcaagatttgttgaatcaagccgaggaagagtttggatatgatcatccaatgggtg 27490082  T
Q  116 gcctaacaattcct 129  Q
    |||| || ||||||    
T  27490083 gcctcaccattcct 27490096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 27585717 - 27585834
Alignment:
Q  22 tttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaa 121  Q
    ||||||||||||   ||||||||||||||| | |  |||||||| ||| |||||||||| || ||||| |||||||||||||| |||||||| || || |    
T  27585717 tttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgatgagtcaagccgaagaagagtttggatatgatcatccaatgggaggtctca 27585816  T
Q  122 caattccttgcacagaag 139  Q
    | ||||||||||||||||    
T  27585817 ccattccttgcacagaag 27585834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 132
Target Start/End: Original strand, 27498435 - 27498554
Alignment:
Q  13 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgg 112  Q
    |||||||| ||||||||||| |  ||||||||||||||| | || || |||||||||||||  ||||| |||||| |||| | ||||||||| |||||||    
T  27498435 atgaaacgttttgtgatccctatatcatacttgaaccaaccatcgttccaagacttgttgaaccaagccgaggaacaattcgaatatgatcatccaatgg 27498534  T
Q  113 gtggcctaacaattccttgc 132  Q
    |||| || || |||||||||    
T  27498535 gtggtctcactattccttgc 27498554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 27557516 - 27557635
Alignment:
Q  20 ggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcct 119  Q
    ||||||||||||| | ||||||||| |||||| | ||||||||||| ||| ||| |||||| |||||| |||||| ||||| ||| ||||||||||| ||    
T  27557516 ggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatcaagctgaggaacaatttgaatatgttcatccaatgggtggtct 27557615  T
Q  120 aacaattccttgcacagaag 139  Q
     || ||||| |||| |||||    
T  27557616 cactattccatgcagagaag 27557635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 37 - 139
Target Start/End: Complemental strand, 27523499 - 27523397
Alignment:
Q  37 tcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacag 136  Q
    ||||| ||||||||| ||||||| ||||| ||||||||  |||| |||||| |||||| |||||| || ||||||||||| ||||| |||||||||| ||    
T  27523499 tcatatttgaaccaaacttcattccaagaattgttgagcgaagccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaaag 27523400  T
Q  137 aag 139  Q
    |||    
T  27523399 aag 27523397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 37 - 139
Target Start/End: Complemental strand, 27526208 - 27526106
Alignment:
Q  37 tcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacag 136  Q
    ||||||||||||||| | ||||| ||||| |||||||| ||||| |||||| |||||| ||||||||| |||| |||||| || || |||||||||| ||    
T  27526208 tcatacttgaaccaaacctcattccaagaattgttgagccaagctgaggaacaatttgaatatgatcatccaacgggtggtctcactattccttgcagag 27526109  T
Q  137 aag 139  Q
    |||    
T  27526108 aag 27526106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 27411552 - 27411456
Alignment:
Q  37 tcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgca 133  Q
    ||||||||||||||| | || |||||||| ||  | | ||||||||| |||||||||||||||||||| || |||||||| || |||||||||||||    
T  27411552 tcatacttgaaccaaccatcgtttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgca 27411456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 27414400 - 27414304
Alignment:
Q  37 tcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgca 133  Q
    ||||||||||||||| | ||||||||||| ||  | | |||| |||| |||||||||||||||||||| ||||||||||| || |||||||| ||||    
T  27414400 tcatacttgaaccaaccctcatttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtcttacaattccgtgca 27414304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 27497436 - 27497321
Alignment:
Q  19 cggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcc 118  Q
    |||||||||||||| |  |||||||| |||||| | |  |||||| | |||||||||||||| |||||||| |||||||||||||| || |  |||||||    
T  27497436 cggtttgtgatccctatctcatacttaaaccaaccattgtttcaatatttgttgagtcaagctgaggaagagtttggatatgatcatcccacaggtggcc 27497337  T
Q  119 taacaattccttgcac 134  Q
    | || |||||||||||    
T  27497336 tcaccattccttgcac 27497321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 27469480 - 27469606
Alignment:
Q  13 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgg 112  Q
    ||||| |||||||||||||| |  ||||| ||||| ||| | ||||| |||||  ||||||| ||||| || ||| |||||| |||||| || |||||||    
T  27469480 atgaagcggtttgtgatccctatatcatatttgaagcaaacatcattacaagaactgttgagccaagctgaagaacaatttgaatatgaacatccaatgg 27469579  T
Q  113 gtggcctaacaattccttgcacagaag 139  Q
    |||| ||||| |||||||||| |||||    
T  27469580 gtggtctaactattccttgcagagaag 27469606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 27479945 - 27480047
Alignment:
Q  37 tcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacag 136  Q
    ||||||||||||||| | ||||| ||| | |||||||  ||||| |||||| |||||| ||||||||| ||||||||||| || || |||||||||| ||    
T  27479945 tcatacttgaaccaaacatcattccaaaagttgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcagag 27480044  T
Q  137 aag 139  Q
    |||    
T  27480045 aag 27480047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 27487003 - 27487129
Alignment:
Q  13 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgg 112  Q
    ||||| ||||||||||||||    |||||||| |||||| | || |||||||| |||||||  ||||| || ||| |||||| ||||||||| |||||||    
T  27487003 atgaagcggtttgtgatccctttatcatacttaaaccaaccatcgtttcaagaattgttgaaccaagctgaagaacaatttgaatatgatcatccaatgg 27487102  T
Q  113 gtggcctaacaattccttgcacagaag 139  Q
    |||| || || |||||||||| |||||    
T  27487103 gtggtcttactattccttgcaaagaag 27487129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 27501337 - 27501455
Alignment:
Q  13 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgg 112  Q
    |||||||||||||||||||| |  |||||||| |||||| | |  ||||||||||||||||  ||||| |||||| |||||| ||| ||||| |||| ||    
T  27501337 atgaaacggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttgaaccaagccgaggaacaatttgaatacgatcatccaacgg 27501436  T
Q  113 gtggcctaacaattccttg 131  Q
    |||| || || ||||||||    
T  27501437 gtggtctcactattccttg 27501455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 139
Target Start/End: Complemental strand, 27505798 - 27505696
Alignment:
Q  37 tcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacag 136  Q
    ||||||||||||||| | ||||| ||||| |||||||  ||||| |||||| |||||| |||||| || ||||||||||| || || |||||||||| ||    
T  27505798 tcatacttgaaccaaacctcattccaagaattgttgaaccaagctgaggaacaatttgaatatgaccatccaatgggtggtctcactattccttgcagag 27505699  T
Q  137 aag 139  Q
    |||    
T  27505698 aag 27505696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 27513896 - 27513770
Alignment:
Q  13 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgg 112  Q
    ||||| |||||||||||||| |  ||||||||||||||| | || || ||||| |||||||  ||||| || ||| ||| || ||||||||| |||||||    
T  27513896 atgaagcggtttgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgttgaaccaagctgaagaacaatatgaatatgatcatccaatgg 27513797  T
Q  113 gtggcctaacaattccttgcacagaag 139  Q
    |||| || || |||||||||| |||||    
T  27513796 gtggtctcactattccttgcagagaag 27513770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 27424610 - 27424514
Alignment:
Q  37 tcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgca 133  Q
    ||||||||||||||| ||||||||||||| ||| | | |||| | || ||||||| |||||||||||| ||||||||||| || || ||||| ||||    
T  27424610 tcatacttgaaccaaccttcatttcaagaattgctaaatcaatctgaagaagaatatggatatgatcatccaatgggtggtcttaccattccgtgca 27424514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 133
Target Start/End: Original strand, 27567299 - 27567395
Alignment:
Q  37 tcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgca 133  Q
    ||||||||||||||| | || |||||||| ||  | | |||| |||| ||||||||||| |||||||| ||||||||||| || |||||||||||||    
T  27567299 tcatacttgaaccaaccatcgtttcaagaattactaaatcaaacagaagaagaatttggttatgatcatccaatgggtggtctcacaattccttgca 27567395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 27486039 - 27485936
Alignment:
Q  37 tcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacag 136  Q
    ||||||||||||||| | |  |||||||| ||| |   |||||| || |||||||||||||||||||| || ||||||||||| || ||||||||||| |    
T  27486039 tcatacttgaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtggcctcaccattccttgcactg 27485940  T
Q  137 aagg 140  Q
    ||||    
T  27485939 aagg 27485936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 133
Target Start/End: Original strand, 27540056 - 27540147
Alignment:
Q  42 cttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgca 133  Q
    |||||| ||| ||||||||||||||||| | ||  | ||||||||||||||||| ||  |||| ||||||||||| ||||| ||||||||||    
T  27540056 cttgaatcaaccttcatttcaagacttgctaagcaaggcagaggaagaatttgggtaccatcatccaatgggtggactaaccattccttgca 27540147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 139
Target Start/End: Original strand, 27476731 - 27476833
Alignment:
Q  37 tcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacag 136  Q
    ||||||||||||||| | ||||| |||||  || |||| |||   |||||| |||||| ||||||||| ||||||||||| ||||| |||||||||| ||    
T  27476731 tcatacttgaaccaaacctcattccaagaactgctgagccaaagtgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgcagag 27476830  T
Q  137 aag 139  Q
    |||    
T  27476831 aag 27476833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 27502207 - 27502129
Alignment:
Q  61 caagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacagaag 139  Q
    ||||| |||||||  ||||| |||||| |||||| ||||||||| ||||||||||| ||||| |||||||||| |||||    
T  27502207 caagaattgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgcagagaag 27502129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 27527183 - 27527281
Alignment:
Q  15 gaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatggg 113  Q
    |||||||||||||||||| |  ||| |||| |||||| | || |||| ||| ||| |||||||||| |||||||| |||||||||||||| || |||||    
T  27527183 gaaacggtttgtgatcccaatatcacacttaaaccaaccatcgtttctagagttgctgagtcaagctgaggaagagtttggatatgatcatcccatggg 27527281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 133
Target Start/End: Complemental strand, 27559330 - 27559240
Alignment:
Q  43 ttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgca 133  Q
    ||||| ||| ||||||||||| | || || || ||| |||| ||||| |||||||||||||| ||||||||||| || |||||||||||||    
T  27559330 ttgaatcaatcttcatttcaatagttattaagccaatcagaagaagagtttggatatgatcatccaatgggtggtctcacaattccttgca 27559240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 27419129 - 27419072
Alignment:
Q  75 tcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgc 132  Q
    |||| |||| |||||||||||||||||||| ||||||||||| || ||||||||||||    
T  27419129 tcaatcagaagaagaatttggatatgatcatccaatgggtggtcttacaattccttgc 27419072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 27566062 - 27565953
Alignment:
Q  22 tttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaa 121  Q
    |||||||||||||  |||||| |||||||| | |  |||||||||||| |||  ||||  ||||||||   |||||||||||| |||||||||||||| |    
T  27566062 tttgtgatccccatatcatacctgaaccaaccattgtttcaagacttgctgatacaagttgaggaagagcatggatatgatcatccaatgggtggcctca 27565963  T
Q  122 caattccttg 131  Q
    | ||||||||    
T  27565962 ccattccttg 27565953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 27571705 - 27571762
Alignment:
Q  75 tcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgc 132  Q
    |||| |||| |||||||||||||||||||| ||||||||||| || ||||||||||||    
T  27571705 tcaatcagaagaagaatttggatatgatcatccaatgggtggtctcacaattccttgc 27571762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 139
Target Start/End: Original strand, 27506724 - 27506844
Alignment:
Q  19 cggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcc 118  Q
    |||||||||||||| |  |||||||| |||||| | |  |||||||| ||| |   |||||| || |||||||||||||||||||| || |||||||| |    
T  27506724 cggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtggac 27506823  T
Q  119 taacaattccttgcacagaag 139  Q
    | || ||||||||||| ||||    
T  27506824 tcaccattccttgcactgaag 27506844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 27556499 - 27556379
Alignment:
Q  13 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgg 112  Q
    ||||| || |||||||| ||||  ||||  ||||||||| ||||||||||||| ||  |   ||||||||| ||||||||||||||||||||  | ||||    
T  27556499 atgaagcgatttgtgattcccatttcattattgaaccaaccttcatttcaagaattactacatcaagcagaagaagaatttggatatgatcattctatgg 27556400  T
Q  113 gtggcctaacaattccttgca 133  Q
    |||| || |||||||| ||||    
T  27556399 gtggtctcacaattccatgca 27556379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 27478979 - 27478884
Alignment:
Q  37 tcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgc 132  Q
    ||||||||||||||| | |  |||||||| ||| |   |||||| || |||||||||||||||||||| || ||||||||||| || |||||||||    
T  27478979 tcatacttgaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtggcctcaccattccttgc 27478884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 27507933 - 27507815
Alignment:
Q  13 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgg 112  Q
    ||||| |||||||| || || | |||||| ||||| ||| ||||| ||||||| ||| | || || || |  ||||||||||||||||| || |||||||    
T  27507933 atgaagcggtttgtaattccaatgtcatatttgaatcaaacttcacttcaagagttgctcagccaggctgtcgaagaatttggatatgaccatccaatgg 27507834  T
Q  113 gtggcctaacaattccttg 131  Q
    |||| || |||||||||||    
T  27507833 gtggtcttacaattccttg 27507815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 131
Target Start/End: Original strand, 27554374 - 27554447
Alignment:
Q  58 tttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttg 131  Q
    |||||||| ||| ||| |||||| |||||| |||||||||||||||| |||| |||| | || |||||||||||    
T  27554374 tttcaagaattgctgaatcaagctgaggaacaatttggatatgatcatccaacgggtagtctcacaattccttg 27554447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 27945687 - 27945722
Alignment:
Q  37 tcatacttgaaccaagcttcatttcaagacttgttg 72  Q
    ||||||||||||||| ||||||||||||||||||||    
T  27945687 tcatacttgaaccaaccttcatttcaagacttgttg 27945722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 27500458 - 27500332
Alignment:
Q  13 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgg 112  Q
    ||||| || ||||||||||| |  |||||||| ||||||  |||||| ||||| ||| |||| ||| | || ||| | || |||||||| || |||||||    
T  27500458 atgaagcgatttgtgatccctatatcatacttaaaccaaagttcattccaagaattgctgagccaatctgaagaacagttcggatatgaccatccaatgg 27500359  T
Q  113 gtggcctaacaattccttgcacagaag 139  Q
    ||||| | || |||||||||| |||||    
T  27500358 gtggcatcactattccttgcagagaag 27500332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 27460507 - 27460624
Alignment:
Q  22 tttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaa 121  Q
    ||||||||||| |  ||||| ||||| |||   ||||| ||||| ||| |||| |||   |||||| |||||| ||||||||| ||||||||||| || |    
T  27460507 tttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaacaatttgaatatgatcatccaatgggtggtctca 27460606  T
Q  122 caattccttgcacagaag 139  Q
    | |||||||||| |||||    
T  27460607 ccattccttgcagagaag 27460624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 27466910 - 27466967
Alignment:
Q  82 gaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacagaag 139  Q
    |||||| |||||| ||||||||| ||||||||||| || || |||||||||| |||||    
T  27466910 gaggaacaatttgaatatgatcatccaatgggtggtctcactattccttgcagagaag 27466967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 27516720 - 27516603
Alignment:
Q  22 tttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaa 121  Q
    ||||||||||| |  ||||| ||||| |||   ||||| ||||| |||||||  ||||| |||||| |||||| |||||| || |||||||| || || |    
T  27516720 tttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgttgaaccaagctgaggaacaatttgaatatgaccatccaatggggggtctca 27516621  T
Q  122 caattccttgcacagaag 139  Q
    | |||||||||| |||||    
T  27516620 ctattccttgcaaagaag 27516603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 3073589 - 3073715
Alignment:
Q  13 atgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgg 112  Q
    ||||| |||||||||||||| | |||||||||||||||| ||||||||||| ||||| ||||||  |||||||||||||| ||||| ||||| |||||||    
T  3073589 atgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgg 3073688  T
Q  113 gtggcctaacaattccttgcacagaag 139  Q
    ||||||| |||||||||||||||||||    
T  3073689 gtggcctcacaattccttgcacagaag 3073715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 1756871 - 1756751
Alignment:
Q  19 cggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcc 118  Q
    |||||||||||||| |  ||||||||||||||| | || |||||| |||||||||||||||| || ||||||||||||||||||||||| ||||||||||    
T  1756871 cggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtcaagctgaagaagaatttggatatgatcaccccatgggtggcc 1756772  T
Q  119 taacaattccttgcacagaag 139  Q
    | || ||||||||||| ||||    
T  1756771 tcaccattccttgcaccgaag 1756751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 1754710 - 1754834
Alignment:
Q  15 gaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaagacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggt 114  Q
    |||||||  ||||||||| |  ||||||||||| ||| | || ||||||  ||||||||||||||| | |||||| |||||||||||||| |||||||||    
T  1754710 gaaacggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgcggaagagtttggatatgatcatccaatgggt 1754809  T
Q  115 ggcctaacaattccttgcacagaag 139  Q
    ||||| || |||| |||||||||||    
T  1754810 ggcctcaccattctttgcacagaag 1754834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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