View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4511_high_10 (Length: 399)

Name: NF4511_high_10
Description: NF4511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4511_high_10
NF4511_high_10
[»] chr8 (17 HSPs)
chr8 (125-390)||(25489282-25489547)
chr8 (125-287)||(25646202-25646369)
chr8 (160-287)||(24913783-24913915)
chr8 (125-252)||(25603826-25603951)
chr8 (125-224)||(25799544-25799640)
chr8 (18-82)||(25489590-25489654)
chr8 (125-187)||(25694637-25694699)
chr8 (18-82)||(25694742-25694806)
chr8 (125-198)||(25321934-25322004)
chr8 (18-82)||(25646412-25646476)
chr8 (18-82)||(24913642-24913706)
chr8 (18-82)||(25322047-25322109)
chr8 (185-274)||(25569119-25569208)
chr8 (18-82)||(25604000-25604064)
chr8 (210-258)||(25321889-25321937)
chr8 (18-66)||(25799658-25799706)
chr8 (286-314)||(25385414-25385442)
[»] scaffold0070 (3 HSPs)
scaffold0070 (160-287)||(17826-17951)
scaffold0070 (18-82)||(17685-17749)
scaffold0070 (286-314)||(18361-18389)
[»] scaffold0526 (1 HSPs)
scaffold0526 (239-284)||(11146-11191)
[»] chr3 (1 HSPs)
chr3 (239-284)||(11971234-11971279)


Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 125 - 390
Target Start/End: Complemental strand, 25489547 - 25489282
Alignment:
Q  125 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttg 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25489547 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactttctaatcagtttttg 25489448  T
Q  225 attgaatatttctgtcttttatgtcatatcaggtggtgtctacttactaggttgctacataatcttgtgtcaaaagtacaaaaatatattgtttgcccga 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25489447 attgaatatttctgtcttttatgtcatatcaggtggtgtctacttactaggttgctacataatcttgtgtcaaaagtacaaaaatatattgtttgcacga 25489348  T
Q  325 aatcaacaagcaaaaaagatgtttnnnnnnnnncaattgcttccagtaattaaactctttgatgat 390  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||| |||||||||    
T  25489347 aatcaacaagcaaaaaagatgtttaaaaaaaaacaattgcttccagtaattaaactatttgatgat 25489282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 125 - 287
Target Start/End: Complemental strand, 25646369 - 25646202
Alignment:
Q  125 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||     
T  25646369 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaaaagatcttctattactgaaccttctaatcagttttta 25646270  T
Q  225 attgaatatttctgtcttttatgtcatatcaggtggtg-----tctacttactaggttgctacataat 287  Q
     ||||||||||||||||||||||| ||| |||||||||     |||||||||||||||||||||||||    
T  25646269 gttgaatatttctgtcttttatgttatagcaggtggtgtctagtctacttactaggttgctacataat 25646202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 160 - 287
Target Start/End: Original strand, 24913783 - 24913915
Alignment:
Q  160 ttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggtg 259  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  24913783 ttgactcattgtgtaagaatgggaagaaaagatcttctattactgaactttctaatcagtttttggttgaatatttctgtcttttatgttatagcaggtg 24913882  T
Q  260 gt-----gtctacttactaggttgctacataat 287  Q
    ||     ||||||||||||||||||||||||||    
T  24913883 gtgtctagtctacttactaggttgctacataat 24913915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 125 - 252
Target Start/End: Complemental strand, 25603951 - 25603826
Alignment:
Q  125 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagt-tttt 223  Q
    ||||||||||||||||||||   ||||| ||||||||||||||||||||| |||| ||||||||||||||| |||||||||||| |||||||||| ||||    
T  25603951 ggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtgtacgaatgggaagaaaagatcttatattactgaactttctaatcagtttttt 25603855  T
Q  224 gattgaatatttctgtcttttatgtcata 252  Q
    | ||||||||||||| ||||| |||||||    
T  25603854 ggttgaatatttctgccttttttgtcata 25603826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 125 - 224
Target Start/End: Complemental strand, 25799640 - 25799544
Alignment:
Q  125 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttg 224  Q
    ||||||||||||||||||||   ||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||    
T  25799640 ggtgcagtctttggaggaga---gtagtgagggtcttgaatcattgtgtaagaatgggaagaaaagatcttctattactgaactttgtaatcagtttttg 25799544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 25489654 - 25489590
Alignment:
Q  18 ataaggatcaacacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489654 ataaggatcaacacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 25489590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 25694699 - 25694637
Alignment:
Q  125 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaa 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25694699 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaa 25694637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 25694806 - 25694742
Alignment:
Q  18 ataaggatcaacacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 82  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25694806 ataaggatcatcacagaagcatgtaaatcgtgtgtactgtatccatttatgttgtatcccctctc 25694742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 25322004 - 25321934
Alignment:
Q  125 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttcta 198  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  25322004 ggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtgtaagaatgggaagaaaagatcttcta 25321934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 25646476 - 25646412
Alignment:
Q  18 ataaggatcaacacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 82  Q
    |||||||||| |||| |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  25646476 ataaggatcatcacaaaagcatgtaaatcgtgtgtactatatccatttatgttgtatcccctctc 25646412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 24913642 - 24913706
Alignment:
Q  18 ataaggatcaacacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 82  Q
    ||||||||||  ||| |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  24913642 ataaggatcattacaaaagcatgtaaatcgtgtgtactctatccatttatgttgtatcccctctc 24913706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 25322109 - 25322047
Alignment:
Q  18 ataaggatcaacacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 82  Q
    |||||||||| ||||||||||||||||| ||||||| ||||||||||||  ||||||||||||||    
T  25322109 ataaggatcatcacagaagcatgtaaattgtgtgtactgtatccattta--ttgtatcccctctc 25322047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 274
Target Start/End: Complemental strand, 25569208 - 25569119
Alignment:
Q  185 gaaaagatcttctattactgaactgtctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggtggtgtctacttactag 274  Q
    ||||||||||||||||||||||||  ||||||| |||||  ||| |||||| | |||| | ||||||| ||||||||||||| |||||||    
T  25569208 gaaaagatcttctattactgaacttgctaatcatttttttgttgcatatttatttcttctctgtcataccaggtggtgtctagttactag 25569119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 25604064 - 25604000
Alignment:
Q  18 ataaggatcaacacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 82  Q
    |||||||||| ||||||||||||||||||||||||| | ||||||| ||| |||||| |||||||    
T  25604064 ataaggatcatcacagaagcatgtaaatcgtgtgtactatatccatatatattgtataccctctc 25604000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 25321937 - 25321889
Alignment:
Q  210 tctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggt 258  Q
    ||||||||||||||| |||||||| |||| ||||||||||||| |||||    
T  25321937 tctaatcagtttttggttgaatatatctgccttttatgtcatagcaggt 25321889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 25799706 - 25799658
Alignment:
Q  18 ataaggatcaacacagaagcatgtaaatcgtgtgtattgtatccattta 66  Q
    |||||||| | ||||||||||||||||| ||||||| ||||||||||||    
T  25799706 ataaggatgatcacagaagcatgtaaatggtgtgtactgtatccattta 25799658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 314
Target Start/End: Complemental strand, 25385442 - 25385414
Alignment:
Q  286 atcttgtgtcaaaagtacaaaaatatatt 314  Q
    |||||||||||||||||||||||||||||    
T  25385442 atcttgtgtcaaaagtacaaaaatatatt 25385414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 160 - 287
Target Start/End: Original strand, 17826 - 17951
Alignment:
Q  160 ttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggtg 259  Q
    |||||||||||||||||||| ||||||||||||  |||||||||||||| ||||||||||||||| || | ||||| |||||||||||| ||| ||||||    
T  17826 ttgactcattgtgtaagaatgggaagaaaagat--tctattactgaactttctaatcagtttttggttaattatttttgtcttttatgttatagcaggtg 17923  T
Q  260 gtgtctacttactaggttgctacataat 287  Q
    ||||||||||||||||||||||||||||    
T  17924 gtgtctacttactaggttgctacataat 17951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 17685 - 17749
Alignment:
Q  18 ataaggatcaacacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 82  Q
    ||||||||||  ||| || ||||||||||||||||| ||||||||||||||||||||||||||||    
T  17685 ataaggatcattacaaaaacatgtaaatcgtgtgtactgtatccatttatgttgtatcccctctc 17749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 314
Target Start/End: Original strand, 18361 - 18389
Alignment:
Q  286 atcttgtgtcaaaagtacaaaaatatatt 314  Q
    |||||||||||||||||||||||||||||    
T  18361 atcttgtgtcaaaagtacaaaaatatatt 18389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 11146 - 11191
Alignment:
Q  239 tcttttatgtcatatcaggtggtgtctacttactaggttgctacat 284  Q
    |||||| ||||||| || |||||||||||||||||| |||||||||    
T  11146 tcttttgtgtcataccatgtggtgtctacttactagtttgctacat 11191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 11971234 - 11971279
Alignment:
Q  239 tcttttatgtcatatcaggtggtgtctacttactaggttgctacat 284  Q
    |||||| ||||||| || |||||||||||||||||| |||||||||    
T  11971234 tcttttgtgtcataccatgtggtgtctacttactagtttgctacat 11971279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University