View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4511_high_14 (Length: 263)

Name: NF4511_high_14
Description: NF4511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4511_high_14
NF4511_high_14
[»] chr8 (15 HSPs)
chr8 (119-263)||(25321864-25322008)
chr8 (6-147)||(24913901-24914044)
chr8 (1-137)||(25694455-25694593)
chr8 (107-263)||(25603783-25603955)
chr8 (23-147)||(25646100-25646216)
chr8 (189-263)||(25799570-25799644)
chr8 (189-263)||(25646296-25646373)
chr8 (189-263)||(25489474-25489551)
chr8 (189-263)||(24913743-24913821)
chr8 (200-263)||(25694637-25694703)
chr8 (144-193)||(24913832-24913881)
chr8 (144-194)||(25646236-25646286)
chr8 (144-193)||(25489414-25489463)
chr8 (1-37)||(25603697-25603733)
chr8 (216-252)||(25714483-25714519)
[»] scaffold0070 (2 HSPs)
scaffold0070 (1-147)||(17937-18085)
scaffold0070 (195-263)||(17786-17858)
[»] scaffold1281 (1 HSPs)
scaffold1281 (7-140)||(990-1126)
[»] scaffold0526 (1 HSPs)
scaffold0526 (7-140)||(11192-11328)
[»] chr3 (1 HSPs)
chr3 (7-140)||(11971280-11971416)


Alignment Details
Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 119 - 263
Target Start/End: Original strand, 25321864 - 25322008
Alignment:
Q  119 tatttttctgcacaattatgtagcaacctgctatgacataaaaggcagaaatattcaaccaaaagctgattagaagatcttttcttcccattcttataca 218  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  25321864 tatttttctgcaaaattatgtagcaacctgctatgacataaaaggcagatatattcaaccaaaaactgattagaagatcttttcttcccattcttacaca 25321963  T
Q  219 atgagtcaagaccctcactactctcctccaaagactgcaccatta 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  25321964 atgagtcaagaccctcactactctcctccaaagactgcaccatta 25322008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 24914044 - 24913901
Alignment:
Q  6 tttttgtccaagtcgtcccttaggcttcttaatatacttcaataaccttgagcttaaagtacaaatcaaatttgattatacaaatctccacaatgataac 105  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |  | ||||||||||||||    
T  24914044 tttttgtccaagttgtcccttaggcttcttaatatacttcaacaaccttgagcttaaagtacaaataaaatttgattataaatgtatccacaatgataac 24913945  T
Q  106 --acatgtccaactatatttttctgcacaattatgtagcaacct 147  Q
      ||||||||||||||||||||||||||||||||||||||||||    
T  24913944 aaacatgtccaactatatttttctgcacaattatgtagcaacct 24913901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 25694455 - 25694593
Alignment:
Q  1 cttcgtttttgtccaagtcgtcccttaggcttcttaatatacttcaataaccttgagcttaaagtacaaatcaaatttgattatacaaatctccacaatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||  | |||||||||    
T  25694455 cttcgtttttgtccaagtcgtcccttaggcttcttaatatacttcaacaaccttgagcttaaagtacaaataaaatttgattatacatgtatccacaatg 25694554  T
Q  101 ataac--acatgtccaactatatttttctgcacaattat 137  Q
    |||||  ||||||||||| ||||||||||||||||||||    
T  25694555 ataacaaacatgtccaacgatatttttctgcacaattat 25694593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 107 - 263
Target Start/End: Original strand, 25603783 - 25603955
Alignment:
Q  107 catgtccaactatatttttctgcacaattatgtagcaacctgctatgacataaaaggcagaaatattcaaccaaaag-ctgattagaa------------ 193  Q
    |||||||||  |||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||  ||||||||||                
T  25603783 catgtccaaaaatatttttatgcacaattatgtagcaacctactatgacaaaaaaggcagaaatattcaaccaaaaaactgattagaaagttcagtaata 25603882  T
Q  194 ---gatcttttcttcccattcttatacaatgagtcaagaccctcactactctcctccaaagactgcaccatta 263  Q
       |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25603883 taagatcttttcttcccattcgtacacaatgagtcaagaccctcactactctcctccaaagactgcaccatta 25603955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 147
Target Start/End: Original strand, 25646100 - 25646216
Alignment:
Q  23 ccttaggcttcttaatatacttcaataaccttgagcttaaagtacaaatcaaatttgattatacaaatctccacaatgataac--acatgtccaactata 120  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||          |||||||||||  |||||||||||||||    
T  25646100 ccttaggcttcttaatatacttcaacaaccttgagcttaaagtacaaataaaatttgattat----------acaatgataacaaacatgtccaactata 25646189  T
Q  121 tttttctgcacaattatgtagcaacct 147  Q
    |||||||||||||||||||||||||||    
T  25646190 tttttctgcacaattatgtagcaacct 25646216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 25799570 - 25799644
Alignment:
Q  189 tagaagatcttttcttcccattcttatacaatgagtcaagaccctcactactctcctccaaagactgcaccatta 263  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25799570 tagaagatcttttcttcccattcttacacaatgattcaagaccctcactactctcctccaaagactgcaccatta 25799644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 25646296 - 25646373
Alignment:
Q  189 tagaagatcttttcttcccattcttatacaatgagtcaagaccctcactac---tctcctccaaagactgcaccatta 263  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||   ||||||||||||||||||||||||    
T  25646296 tagaagatcttttcttcccattcttacacaatgagtcaagacccttactactattctcctccaaagactgcaccatta 25646373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 25489474 - 25489551
Alignment:
Q  189 tagaagatcttttcttcccattcttatacaatgagtcaagaccctcactac---tctcctccaaagactgcaccatta 263  Q
    |||||||||||||||||| ||||||| |||||||||||||||||| |||||   ||||||||||||||||||||||||    
T  25489474 tagaagatcttttcttcctattcttacacaatgagtcaagacccttactactattctcctccaaagactgcaccatta 25489551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 189 - 263
Target Start/End: Complemental strand, 24913821 - 24913743
Alignment:
Q  189 tagaagatcttttcttcccattcttatacaatgag----tcaagaccctcactactctcctccaaagactgcaccatta 263  Q
    |||||||||||||||||||||||||| ||||||||    ||||||| ||||||||| ||||||||||||||||||||||    
T  24913821 tagaagatcttttcttcccattcttacacaatgagtcaatcaagacgctcactactttcctccaaagactgcaccatta 24913743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 263
Target Start/End: Original strand, 25694637 - 25694703
Alignment:
Q  200 ttcttcccattcttatacaatgagtcaagaccctcactac---tctcctccaaagactgcaccatta 263  Q
    ||||||||||||||| |||||||||||||||||| |||||   ||||||||||||||||||||||||    
T  25694637 ttcttcccattcttacacaatgagtcaagacccttactactattctcctccaaagactgcaccatta 25694703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 24913881 - 24913832
Alignment:
Q  144 acctgctatgacataaaaggcagaaatattcaaccaaaagctgattagaa 193  Q
    ||||||||| ||||||||| ||||||||||||||||||| ||||||||||    
T  24913881 acctgctataacataaaagacagaaatattcaaccaaaaactgattagaa 24913832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 25646236 - 25646286
Alignment:
Q  144 acctgctatgacataaaaggcagaaatattcaaccaaaagctgattagaag 194  Q
    ||||||||| ||||||||| |||||||||||||| |||| |||||||||||    
T  25646236 acctgctataacataaaagacagaaatattcaactaaaaactgattagaag 25646286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 25489414 - 25489463
Alignment:
Q  144 acctgctatgacataaaaggcagaaatattcaaccaaaagctgattagaa 193  Q
    ||||| ||||||||||||| ||||||||||||| ||||| ||||||||||    
T  25489414 acctgatatgacataaaagacagaaatattcaatcaaaaactgattagaa 25489463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25603697 - 25603733
Alignment:
Q  1 cttcgtttttgtccaagtcgtcccttaggcttcttaa 37  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  25603697 cttcgtttttgtctaagtcgtcccttaggcttgttaa 25603733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 25714483 - 25714519
Alignment:
Q  216 acaatgagtcaagaccctcactactctcctccaaaga 252  Q
    |||| ||||||||| ||||||||||||||||||||||    
T  25714483 acaaggagtcaagagcctcactactctcctccaaaga 25714519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 18085 - 17937
Alignment:
Q  1 cttcgtttttgtccaagtcgtcccttaggcttcttaatatacttcaataaccttgagcttaaagtacaaatcaaatttgattatacaaatctccacaatg 100  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||  | |||||||||    
T  18085 cttcgtttttgtccaagtcgtcctttaagcttcttaatatacttcaacaaccttgagcttaaagtaaaaatcaaatttgattatacatgtatccacaatg 17986  T
Q  101 ataac--acatgtccaactatatttttctgcacaattatgtagcaacct 147  Q
    |||||  ||||||||| ||||||||||||||||||||||||||||||||    
T  17985 ataacaaacatgtccagctatatttttctgcacaattatgtagcaacct 17937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 263
Target Start/End: Complemental strand, 17858 - 17786
Alignment:
Q  195 atcttttcttcccattcttatacaatgagtcaa----gaccctcactactctcctccaaagactgcaccatta 263  Q
    |||||||||||||||||||| ||||||||||||    ||||||||||||| |||||||| |||||||||||||    
T  17858 atcttttcttcccattcttacacaatgagtcaatcaagaccctcactactttcctccaaggactgcaccatta 17786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1281 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1281
Description:

Target: scaffold1281; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 990 - 1126
Alignment:
Q  7 ttttgtccaagtcgtcccttaggcttcttaatatacttcaataaccttgagcttaaa-gtacaaatcaaatttgattatacaaatctccacaatgataac 105  Q
    ||||||| ||||| || ||||||||||||||||| ||| |  |  ||||| ||||||  ||||||||||| ||||  ||||| ||||| | | |||||||    
T  990 ttttgtctaagtcatcacttaggcttcttaatattctttaccatgcttgatcttaaatttacaaatcaaaattgagaatacatatctctaaattgataac 1089  T
Q  106 --acatgtccaactatatttttctgcacaattatgta 140  Q
      |||||| ||||||| ||||||||| ||||||||||    
T  1090 aaacatgttcaactatgtttttctgctcaattatgta 1126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 11328 - 11192
Alignment:
Q  7 ttttgtccaagtcgtcccttaggcttcttaatatacttcaataaccttgagcttaaa-gtacaaatcaaatttgattatacaaatctccacaatgataac 105  Q
    ||||||| ||||| || ||||||||||||||||| ||| |  |  ||||| ||||||  ||||||||||||||||  |||||  |||| | | |||||||    
T  11328 ttttgtctaagtcatcacttaggcttcttaatattctttaccatgcttgatcttaaatttacaaatcaaatttgagaatacatgtctctaaattgataac 11229  T
Q  106 --acatgtccaactatatttttctgcacaattatgta 140  Q
      |||||| ||||||| ||||||||| ||||||||||    
T  11228 aaacatgttcaactatgtttttctgctcaattatgta 11192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 11971416 - 11971280
Alignment:
Q  7 ttttgtccaagtcgtcccttaggcttcttaatatacttcaataaccttgagcttaaa-gtacaaatcaaatttgattatacaaatctccacaatgataac 105  Q
    ||||||| ||||| || ||||||||||||||||| ||| |  |  ||||| ||||||  ||||||||||| ||||  |||||  |||| | | |||||||    
T  11971416 ttttgtctaagtcatcacttaggcttcttaatattctttaccatgcttgatcttaaatttacaaatcaaaattgagaatacatgtctctaaattgataac 11971317  T
Q  106 --acatgtccaactatatttttctgcacaattatgta 140  Q
      |||||| ||||||| ||||||||| ||||||||||    
T  11971316 aaacatgttcaactatgtttttctgctcaattatgta 11971280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University