View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4511_high_16 (Length: 236)
Name: NF4511_high_16
Description: NF4511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4511_high_16 |
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| [»] scaffold0928 (1 HSPs) |
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Alignment Details
Target: scaffold0928 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: scaffold0928
Description:
Target: scaffold0928; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 40 - 232
Target Start/End: Complemental strand, 2956 - 2760
Alignment:
| Q |
40 |
gaaggagggaaatgcttttgttatcttctccatggtagtaactgtcatctcatgtcccaatcaaagagagatgtaacaaaatagtggtacaacagatttc |
139 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2956 |
gaaggagggaaatgcttttgttatcttctccatggtagtaactgtcacctcatgtcccaatcaaagagagatgtaacaaaatagtggtacaacagatttc |
2857 |
T |
|
| Q |
140 |
cagaagatatttaattccatattttagttgtgcct----ttaaatcttgaagcctatgttgggcgttggagtgtgtctttggttagaattatctacc |
232 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
2856 |
cagaagatatgtaattccatattttagttgtgcctttaattaaatcttgaagcctatgttgggcgttggagtgtgtctttggttaaaataatctacc |
2760 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 40 - 232
Target Start/End: Complemental strand, 5312683 - 5312487
Alignment:
| Q |
40 |
gaaggagggaaatgcttttgttatcttctccatggtagtaactgtcatctcatgtcccaatcaaagagagatgtaacaaaatagtggtacaacagatttc |
139 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5312683 |
gaaggagggaaatgcttttgttatcttctccatggtagtaactgtcacctcatgtcccaatcaaagagagatgtaacaaaatagtggtacaacagatttc |
5312584 |
T |
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| Q |
140 |
cagaagatatttaattccatattttagttgtgcct----ttaaatcttgaagcctatgttgggcgttggagtgtgtctttggttagaattatctacc |
232 |
Q |
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| T |
5312583 |
cagaagatatgtaattccatattttagttgtgcctttaattaaatcttgaagcctatgttgggcgttggagtgtgtctttggttaaaataatctacc |
5312487 |
T |
|
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Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 40 - 232
Target Start/End: Complemental strand, 54754006 - 54753810
Alignment:
| Q |
40 |
gaaggagggaaatgcttttgttatcttctccatggtagtaactgtcatctcatgtcccaatcaaagagagatgtaacaaaatagtggtacaacagatttc |
139 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54754006 |
gaaggagggaaatgcttttgttatcttctccatggtagtaactgtcacctcatgtcccaatcaaagagagatgtaacaaaatagtggtacaacagatttc |
54753907 |
T |
|
| Q |
140 |
cagaagatatttaattccatattttagttgtgcct----ttaaatcttgaagcctatgttgggcgttggagtgtgtctttggttagaattatctacc |
232 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
54753906 |
cagaagatatgtaattccatattttagttgtgcctttaattaaatcttgaagcctatgttgggcgttggagtgtgtctttggttaaaataatctacc |
54753810 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 41 - 232
Target Start/End: Original strand, 29516159 - 29516354
Alignment:
| Q |
41 |
aaggagggaaatgcttttgttatcttctccatggtagtaactgtcatctcatgtcccaatcaaagagagatgtaacaaaatagtggtacaacagatttcc |
140 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||| | |
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| T |
29516159 |
aaggagggaaatgcttttgttatcttctccatggtagtaactgtcacctcatgtcccaatcatggagagatgtaacaaaatagtggtacaaaagattttc |
29516258 |
T |
|
| Q |
141 |
agaagatatttaattccatattttagttgtgcct----ttaaatcttgaagcctatgttgggcgttggagtgtgtctttggttagaattatctacc |
232 |
Q |
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|
||||| ||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
29516259 |
agaaggtatgtaatttcatattttagttgtgcctttaattaaatcttgaagcctatgttgggcgttggagtgtgtctttggttaaaataatctacc |
29516354 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 44 - 232
Target Start/End: Original strand, 53345214 - 53345400
Alignment:
| Q |
44 |
gagggaaatgcttttgttatcttctccatggtagtaactgtcatctcatgtcccaatcaaagagagatgtaacaaaatagtggtacaacagatttccaga |
143 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
53345214 |
gagggaaatgcctttgttatcttctccatggtagtaactgtcacctcatgtcccaatcaaagagagatgtaacaaaatagtggtataaca------aaga |
53345307 |
T |
|
| Q |
144 |
agatatttaattccatattttagttgtgcct----ttaaatcttgaagcctatgttgggcgttggagtgtgtctttggttagaattatctacc |
232 |
Q |
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|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
53345308 |
agatatgtaattccatattttagttgtgcctttaattaaatcttgaagcctatgttgggcgttggagtgtgtctttggttaaaataatctacc |
53345400 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 40 - 232
Target Start/End: Original strand, 9147468 - 9147664
Alignment:
| Q |
40 |
gaaggagggaaatgcttttgttatcttctccatggtagtaactgtcatctcatgtcccaatcaaagagagatgtaacaaaatagtggtacaacagatttc |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
9147468 |
gaaggagggaaatgcttttgttatcttctcgatggtagtaactgtcacctcatgtcccaatcaaagagagatgtaacaaaatagtggtacaccagatttc |
9147567 |
T |
|
| Q |
140 |
cagaagatatttaattccatattttagttgtgccttt----aaatcttgaagcctatgttgggcgttggagtgtgtctttggttagaattatctacc |
232 |
Q |
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|
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
9147568 |
cagaagatatgtaattccatattttagttgtgcctttaatcaaatcttgaagcctatgttgggcgttggagtgtgtctttggttaaaataatctacc |
9147664 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 23455123 - 23455230
Alignment:
| Q |
46 |
gggaaatgcttttgttatcttctccatggtagtaactgtcatctcat-----gtcccaatcaaagagagatgtaacaaaatagtggtacaacagatttcc |
140 |
Q |
| |
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|||||| ||||||||||||||||||| ||||||||| ||| |||| ||||||| |||||||||||| ||| |||||||||||| || ||| ||| |
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| T |
23455123 |
gggaaaggcttttgttatcttctccaaggtagtaaccatcacctcaactcaagtcccaaccaaagagagatgcaacgaaatagtggtacgacggatatcc |
23455222 |
T |
|
| Q |
141 |
agaagata |
148 |
Q |
| |
|
|||||||| |
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|
| T |
23455223 |
agaagata |
23455230 |
T |
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