View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4511_low_1 (Length: 625)
Name: NF4511_low_1
Description: NF4511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4511_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 251 - 615
Target Start/End: Original strand, 45398052 - 45398416
Alignment:
| Q |
251 |
atacctcgggtgagttagctagagtcctggcaagtgcaactctttgagcttgacccacagagaggtcagcacctgacttatccttaaaagtagaagcatc |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45398052 |
atacctcgggtgagttagctagagtcctggcaagtgcaactctttgagcttgacccacagagagttcagcacctgacttatccttaaaagtagaagcatc |
45398151 |
T |
|
| Q |
351 |
tagatccgccattaacagcaacttccccacctcatcgtccgttagctttattcccctcagttgtggaccatatctcacgttgtccgcaactgtaccttca |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45398152 |
tagatccgccattaacagcaacttccccacctcatcgtccgttagctttattcccctcagttgtggtccatatctcacgttgtccgcaactgtaccttca |
45398251 |
T |
|
| Q |
451 |
aagagagcagggagctgaaagagcatggcgaccttacggcggagggaaagaacgtcaaggttacatatgtctacgccatcgaggaagacggaggaggaag |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45398252 |
aagagagcagggagctgaaagagcatggcgaccttacggcggagggaaagaacgtcaaggttacatatgtctacgccatcgaggaagacggaggaggaag |
45398351 |
T |
|
| Q |
551 |
gtggctcccagaggcgattcatggcccttaagagggttgacttgccgctaccactaggacctatg |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45398352 |
gtggctcccagaggcgattcatggcccttaagagggttgacttgccgctaccactaggacctatg |
45398416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 45397824 - 45397985
Alignment:
| Q |
20 |
aagcacactacatcagccatcctctgtatttgtttgatgctatgagaaaccatgatgagtgtcatgccctgattcttgttcaacttcatgagggcacctt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45397824 |
aagcacactacatcagccatcctctgtatttgtttgatgctatgagaaaccatgatgagtgtcatgccctgattcttgttcaacttcatgagggcacctt |
45397923 |
T |
|
| Q |
120 |
caatattttctgtggatattggatctaatgcactagtaggctcatccaacagcaaaacctgt |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45397924 |
caatattttctgtggatattggatctaatgcactagtaggctcatccaacagcaaaacctgt |
45397985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University