View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4511_low_10 (Length: 401)
Name: NF4511_low_10
Description: NF4511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4511_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 52 - 401
Target Start/End: Complemental strand, 5334504 - 5334155
Alignment:
| Q |
52 |
cctgagcaaggattttttggggcaaaccggaaccttggaagaaggagacggcttcgacgccgctgacacgaccgtcgcaatccaaatcggcacgacggaa |
151 |
Q |
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| T |
5334504 |
cctgagcaaggattttttggggcaaaccggaaccttggaagaaggagacggcttcgacgccgctgatacgaccgtcgcaatccaaatcggcacgacggaa |
5334405 |
T |
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| Q |
152 |
aaaagcatcgaacaaaaccacattaggcgctgacaatgatgatgatgatgccattgcagcgcaacagcagcagcacacaattcaggttttaggaattgaa |
251 |
Q |
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| T |
5334404 |
aaaagcatcgaacaaaaccacattaggcgctgacaatgatgatgatgatgccattgcagcgcaacagcagcagcacacaattcaggttttaggaattgaa |
5334305 |
T |
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| Q |
252 |
ttgaaccgatcgctaatgaatcaacaaataccctcgtttcatcgccgtaaattctgtgtttagtagttatcattgttgatttgatttcaaaattatcgca |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5334304 |
ttgaaccgatcgctaatgaatcaacaaataccctcgtttcatcgccgtaaattctgtgtttagtagttatcattgttgatttgatttcaaaattatcgca |
5334205 |
T |
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| Q |
352 |
atcttctccttctaatcctatttcgcttccttttctgttctcgtcaatct |
401 |
Q |
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| T |
5334204 |
atcttctccttctaatcctatttcgcttccttttctgttctcgtcaatct |
5334155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 52 - 198
Target Start/End: Complemental strand, 43470382 - 43470236
Alignment:
| Q |
52 |
cctgagcaaggattttttggggcaaaccggaaccttggaagaaggagacggcttcgacgccgctgacacgaccgtcgcaatccaaatcggcacgacggaa |
151 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| ||||||| ||| ||||| | ||||||||||||||||||||| |
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| T |
43470382 |
cctgagcaaggacttttttgggcaaaccggaaccttggaagaaagagacggcttcgacaccgctgatacggccgtcacgatccaaatcggcacgacggaa |
43470283 |
T |
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| Q |
152 |
aaaagcatcgaacaaaaccacattaggcgctgacaatgatgatgatg |
198 |
Q |
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| |||||||||||| | ||||||||||||||||| | || ||||||| |
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| T |
43470282 |
ataagcatcgaacagatccacattaggcgctgacgacgaagatgatg |
43470236 |
T |
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