View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4511_low_12 (Length: 396)
Name: NF4511_low_12
Description: NF4511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4511_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 13 - 378
Target Start/End: Complemental strand, 11295800 - 11295416
Alignment:
| Q |
13 |
atgaattaatgatttcttgaggaaatactggtatatgtgtagactatttgatttgannnnnnngtctcttagaataagtctaaaataaatattat----- |
107 |
Q |
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| T |
11295800 |
atgaattaatgatttcttgaggaaatactggtatatgtgtagactatttgatttgatttttttgtctcttagaataagtctaaaataaatattatagaga |
11295701 |
T |
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| Q |
108 |
-------------gaacaaattttgcaaggacttctaaaacaaaacatcaaggaccaaaaacaaagttatatatgttcaaggactattaacaaaaa-ttt |
193 |
Q |
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| T |
11295700 |
cgaatttcaatatgaacaaattttgcaaggacttctaaaacaaaacatcaaggaccaaaaacaaagttatatatgttcaaggactaaaaacaaaaaattt |
11295601 |
T |
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| Q |
194 |
tagaattcaaatatttttatggaccttttacaattctcttatgtcaccgaagggtgaaagtcttagaaatgcttactacattgtagcatgcttgcaattg |
293 |
Q |
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| T |
11295600 |
tagaattcaaatatttttatggacctttgacaattctcttatgtcactgaagggtgaaagtcttagaaatgcttactacattgtagcatgcttgcaattg |
11295501 |
T |
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| Q |
294 |
catggttcacaacaaccttatgtcagtgttttaattgtaattgtttgttagctaggagaagggtttatttttattgttccttaat |
378 |
Q |
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| T |
11295500 |
catggttcacaacaaccttatgtcagtgttttaattgtaattgtttgttagctaggagaagggtttatttttattgttccttaat |
11295416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 348 - 378
Target Start/End: Original strand, 14186637 - 14186667
Alignment:
| Q |
348 |
ggagaagggtttatttttattgttccttaat |
378 |
Q |
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| T |
14186637 |
ggagaagggtttatttttattgttccttaat |
14186667 |
T |
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