View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4511_low_13 (Length: 342)

Name: NF4511_low_13
Description: NF4511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4511_low_13
NF4511_low_13
[»] chr1 (2 HSPs)
chr1 (39-332)||(5333809-5334116)
chr1 (151-223)||(17010879-17010952)
[»] chr6 (3 HSPs)
chr6 (162-330)||(14637783-14637950)
chr6 (147-216)||(26339383-26339453)
chr6 (155-223)||(15669562-15669631)
[»] chr7 (2 HSPs)
chr7 (142-276)||(9792459-9792592)
chr7 (142-216)||(28106885-28106960)
[»] chr4 (2 HSPs)
chr4 (147-223)||(44742537-44742614)
chr4 (147-223)||(13089644-13089721)
[»] chr8 (2 HSPs)
chr8 (175-303)||(24955119-24955245)
chr8 (142-216)||(24970867-24970942)
[»] chr5 (2 HSPs)
chr5 (155-276)||(29963912-29964032)
chr5 (155-276)||(30010766-30010886)
[»] chr3 (1 HSPs)
chr3 (147-223)||(36330676-36330753)


Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 39 - 332
Target Start/End: Complemental strand, 5334116 - 5333809
Alignment:
Q  39 ggtagtgttttcctaaaacctctatgatctacccttccgctttaaattttacgataagttaaccattaacttagggcattgaatatggatataaaaatac 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     
T  5334116 ggtagtgttttcctaaaacctctatgatctacccttccgctttaaattttacgataagttaaccattaacttagggcattgaataaggatataaaaatag 5334017  T
Q  139 aa----------------acctctttatttttcacttatcttttacttctaaaagaagtggagccaaacataattttagtaaaactcttaataaaataag 222  Q
    ||                 ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5334016 aatttatagtatgtttggtcctctttatttttcactaatcttttacttctaagagaagtggagccaaacataattttagtaaaactcttaataaaataag 5333917  T
Q  223 ttacnnnnnnnngtaaagaaggaaatccaacaaaaataattttaaaaataagatgtgaaattgaactttggaacaactttttagcatttctatcagcttc 322  Q
    ||||        ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  5333916 ttac--ttttttgtaaagaaggaaatccaacaaaaatgattttaaaaataagatgtgaaattgaactttggaacaacttttcagcatttatatcagcttc 5333819  T
Q  323 tgcacctttg 332  Q
    ||||||||||    
T  5333818 tgcacctttg 5333809  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 17010879 - 17010952
Alignment:
Q  151 ttttcacttatcttttacttctaa-aagaagtggagccaaacataattttagtaaaactcttaataaaataagt 223  Q
    |||||||||||||| ||||||||| ||||||||| |||||||| ||||||| | ||  ||||||||||| ||||    
T  17010879 ttttcacttatcttctacttctaagaagaagtggggccaaacacaattttaattaagttcttaataaaagaagt 17010952  T

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Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 162 - 330
Target Start/End: Complemental strand, 14637950 - 14637783
Alignment:
Q  162 cttttacttctaaa-agaagtggagccaaacataattttagtaaaactcttaataaaataagttacnnnnnnnngtaaagaaggaaatccaacaaaaata 260  Q
    |||||||||||||  |||||||| |||||||||||||||||||||  |||||||||||||||| ||        |||||||||||||||||||||||||     
T  14637950 cttttacttctaaggagaagtggggccaaacataattttagtaaagttcttaataaaataagtgacgttttt--gtaaagaaggaaatccaacaaaaatg 14637853  T
Q  261 attttaaaaataagatgtgaaattgaactttggaacaactttttagcatttctatcagcttctgcacctt 330  Q
    | ||||||||||||||||||||||||||||| ||||||||||||  || || ||||||||||||||||||    
T  14637852 actttaaaaataagatgtgaaattgaactttagaacaactttttgacacttatatcagcttctgcacctt 14637783  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 26339453 - 26339383
Alignment:
Q  147 ttatttttcacttatcttttacttctaaa-agaagtggagccaaacataattttagtaaaactcttaataa 216  Q
    ||||||| || ||||||||||||| |||| |||||||| |||||||||||||||  |||| ||||||||||    
T  26339453 ttattttccatttatcttttacttttaaagagaagtggggccaaacataattttgataaagctcttaataa 26339383  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 15669631 - 15669562
Alignment:
Q  155 cacttatcttttacttctaa-aagaagtggagccaaacataattttagtaaaactcttaataaaataagt 223  Q
    |||||||||| ||||||||| ||||||||| | |||||| ||||||| | ||| ||||||||||||||||    
T  15669631 cacttatcttctacttctaagaagaagtggggtcaaacacaattttaattaaattcttaataaaataagt 15669562  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 142 - 276
Target Start/End: Complemental strand, 9792592 - 9792459
Alignment:
Q  142 cctctttatttttcacttatcttttacttctaa-aagaagtggagccaaacataattttagtaaaactcttaataaaataagttacnnnnnnnngtaaag 240  Q
    |||| ||||||| |||||||||||||||| ||| ||||||||| |||||||| ||||||| |||| |||||||||||| |||| ||        ||||||    
T  9792592 cctccttattttccacttatcttttacttttaagaagaagtggggccaaacacaattttaataaagctcttaataaaagaagtgac--ttttttgtaaag 9792495  T
Q  241 aaggaaatccaacaaaaataattttaaaaataagat 276  Q
    ||||||||||||||||||| | ||| ||||||||||    
T  9792494 aaggaaatccaacaaaaatgactttgaaaataagat 9792459  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 28106885 - 28106960
Alignment:
Q  142 cctctttatttttcacttatcttttacttctaa-aagaagtggagccaaacataattttagtaaaactcttaataa 216  Q
    |||| ||||||| ||||| |||| ||||||||| ||||||| || ||||||||||||||| ||||  |||||||||    
T  28106885 cctccttattttccacttctcttctacttctaagaagaagtagaaccaaacataattttaataaagttcttaataa 28106960  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 44742537 - 44742614
Alignment:
Q  147 ttatttttcacttatcttttacttctaa-aagaagtggagccaaacataattttagtaaaactcttaataaaataagt 223  Q
    ||||||||||||| |||| ||||||||| ||||||||| |||||||| ||||||| |||| |||||||||||||||||    
T  44742537 ttatttttcacttctcttctacttctaagaagaagtggggccaaacacaattttaataaagctcttaataaaataagt 44742614  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 13089644 - 13089721
Alignment:
Q  147 ttatttttcacttatcttttacttctaa-aagaagtggagccaaacataattttagtaaaactcttaataaaataagt 223  Q
    ||||||||||||| |||| ||||||||| ||||||||| | |||||| |||||||  ||| |||||||||||||||||    
T  13089644 ttatttttcacttctcttctacttctaagaagaagtggggtcaaacacaattttaacaaagctcttaataaaataagt 13089721  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 303
Target Start/End: Original strand, 24955119 - 24955245
Alignment:
Q  175 aagaagtggagccaaacataattttagtaaaactcttaataaaataagttacnnnnnnnngtaaagaaggaaatccaacaaaaataattttaaaaataag 274  Q
    ||||||| | |||||||||||||||| |||| ||||||||||||||||| ||         |||||||| ||| |||| |||| ||| ||||||||||||    
T  24955119 aagaagtagggccaaacataattttaataaagctcttaataaaataagtaactttttta--taaagaagaaaaaccaataaaagtaactttaaaaataag 24955216  T
Q  275 atgtgaaattgaactttggaacaactttt 303  Q
    ||| |||| ||||||||| ||||||||||    
T  24955217 atgggaaagtgaactttgaaacaactttt 24955245  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 24970867 - 24970942
Alignment:
Q  142 cctctttatttttcacttatcttttacttctaaa-agaagtggagccaaacataattttagtaaaactcttaataa 216  Q
    |||| ||||||||||||| |||| |||||||||| |||||| | |||||||||||||||| ||||  |||||||||    
T  24970867 cctccttatttttcacttctcttctacttctaaagagaagtagggccaaacataattttaataaagttcttaataa 24970942  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 155 - 276
Target Start/End: Original strand, 29963912 - 29964032
Alignment:
Q  155 cacttatcttttacttctaaa-agaagtggagccaaacataattttagtaaaactcttaataaaataagttacnnnnnnnngtaaagaaggaaatccaac 253  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||  |||| |||||||||| | |||| ||        |||||||||||||||||||    
T  29963912 cacttatcttttacttctaaagagaagtggggccaaacataattttgataaagctcttaataatagaagtgac--ttttttgtaaagaaggaaatccaac 29964009  T
Q  254 aaaaataattttaaaaataagat 276  Q
    |||| | | ||| ||||||||||    
T  29964010 aaaagtgactttgaaaataagat 29964032  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 155 - 276
Target Start/End: Complemental strand, 30010886 - 30010766
Alignment:
Q  155 cacttatcttttacttctaaa-agaagtggagccaaacataattttagtaaaactcttaataaaataagttacnnnnnnnngtaaagaaggaaatccaac 253  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||  |||| |||||||||| | |||| ||        |||||||||||||||||||    
T  30010886 cacttatcttttacttctaaagagaagtggggccaaacataattttgataaagctcttaataatagaagtgac--ttttttgtaaagaaggaaatccaac 30010789  T
Q  254 aaaaataattttaaaaataagat 276  Q
    |||| | | ||| ||||||||||    
T  30010788 aaaagtgactttgaaaataagat 30010766  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 223
Target Start/End: Original strand, 36330676 - 36330753
Alignment:
Q  147 ttatttttcacttatcttttacttctaa-aagaagtggagccaaacataattttagtaaaactcttaataaaataagt 223  Q
    ||||||| ||||| |||| ||||||||| ||||||||| | |||||| ||||||| |||| || ||||||||||||||    
T  36330676 ttattttccacttctcttctacttctaagaagaagtggggtcaaacacaattttaataaagcttttaataaaataagt 36330753  T

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