View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4511_low_14 (Length: 277)

Name: NF4511_low_14
Description: NF4511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4511_low_14
NF4511_low_14
[»] chr3 (14 HSPs)
chr3 (1-168)||(24144009-24144179)
chr3 (186-266)||(42394437-42394517)
chr3 (182-266)||(53581876-53581960)
chr3 (186-266)||(46941055-46941135)
chr3 (186-266)||(54237098-54237178)
chr3 (176-266)||(25413673-25413763)
chr3 (186-266)||(4190283-4190363)
chr3 (186-266)||(24688420-24688500)
chr3 (186-266)||(40808867-40808947)
chr3 (186-266)||(42100690-42100770)
chr3 (186-266)||(45126946-45127026)
chr3 (186-266)||(54246166-54246246)
chr3 (184-266)||(27748563-27748645)
chr3 (186-266)||(47191044-47191123)
[»] chr6 (9 HSPs)
chr6 (183-266)||(30735981-30736064)
chr6 (186-266)||(7273353-7273433)
chr6 (186-266)||(13743239-13743319)
chr6 (186-266)||(13748739-13748819)
chr6 (184-266)||(24204005-24204087)
chr6 (186-266)||(9698351-9698431)
chr6 (186-266)||(21279931-21280011)
chr6 (186-266)||(26670027-26670107)
chr6 (186-266)||(30014345-30014425)
[»] chr8 (15 HSPs)
chr8 (186-266)||(5754905-5754985)
chr8 (186-266)||(2546998-2547078)
chr8 (179-247)||(18066755-18066823)
chr8 (186-266)||(11582768-11582848)
chr8 (182-266)||(20148758-20148842)
chr8 (182-266)||(29800968-29801052)
chr8 (186-266)||(36743501-36743581)
chr8 (184-266)||(26125635-26125717)
chr8 (184-266)||(30912580-30912662)
chr8 (192-266)||(31384672-31384746)
chr8 (186-267)||(2165980-2166061)
chr8 (183-266)||(42295194-42295277)
chr8 (183-266)||(42699256-42699339)
chr8 (186-264)||(30660762-30660840)
chr8 (186-266)||(29705364-29705444)
[»] chr7 (13 HSPs)
chr7 (186-266)||(5015397-5015477)
chr7 (181-266)||(35069718-35069803)
chr7 (182-266)||(4638217-4638301)
chr7 (186-266)||(9216304-9216383)
chr7 (186-266)||(24001030-24001110)
chr7 (186-266)||(42538449-42538529)
chr7 (186-266)||(42972854-42972934)
chr7 (182-266)||(44326176-44326260)
chr7 (187-264)||(26898422-26898499)
chr7 (186-247)||(39998410-39998471)
chr7 (183-266)||(43343642-43343725)
chr7 (184-242)||(10573749-10573807)
chr7 (184-266)||(44416952-44417034)
[»] chr1 (8 HSPs)
chr1 (186-266)||(48498980-48499060)
chr1 (182-266)||(4401325-4401410)
chr1 (186-266)||(5489778-5489858)
chr1 (180-266)||(2497580-2497666)
chr1 (186-264)||(50448280-50448358)
chr1 (186-266)||(43571104-43571184)
chr1 (179-266)||(7447821-7447907)
chr1 (186-242)||(35000155-35000211)
[»] scaffold0157 (1 HSPs)
scaffold0157 (186-264)||(23441-23519)
[»] chr4 (15 HSPs)
chr4 (186-264)||(12496958-12497036)
chr4 (183-266)||(43514704-43514787)
chr4 (186-264)||(27550311-27550389)
chr4 (181-266)||(48463468-48463553)
chr4 (186-266)||(1771284-1771364)
chr4 (187-247)||(23204815-23204875)
chr4 (186-266)||(28982840-28982920)
chr4 (186-266)||(33703143-33703223)
chr4 (186-266)||(55966364-55966444)
chr4 (179-266)||(27893860-27893947)
chr4 (186-247)||(45490350-45490411)
chr4 (186-266)||(27864566-27864646)
chr4 (181-266)||(31680899-31680984)
chr4 (186-266)||(25051695-25051775)
chr4 (179-266)||(39631095-39631183)
[»] scaffold0038 (1 HSPs)
scaffold0038 (186-266)||(112657-112737)
[»] chr2 (6 HSPs)
chr2 (186-266)||(19047159-19047239)
chr2 (182-267)||(43490418-43490503)
chr2 (186-266)||(30838634-30838714)
chr2 (186-266)||(1750416-1750496)
chr2 (186-266)||(4764744-4764824)
chr2 (186-266)||(43335781-43335861)
[»] scaffold0119 (1 HSPs)
scaffold0119 (186-266)||(687-767)
[»] chr5 (6 HSPs)
chr5 (186-266)||(2614667-2614747)
chr5 (186-266)||(22512307-22512387)
chr5 (186-266)||(7617135-7617215)
chr5 (186-266)||(18033984-18034064)
chr5 (183-266)||(5256994-5257077)
chr5 (186-242)||(33855085-33855141)
[»] scaffold0187 (2 HSPs)
scaffold0187 (186-266)||(14206-14286)
scaffold0187 (186-266)||(24534-24614)


Alignment Details
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 24144179 - 24144009
Alignment:
Q  1 aattccaaatttaagaattaagggactaaaatcatatttcatcataattactttttagctaaagattttctgaacatgatatatgataagattttatggt 100  Q
    |||||||||||||| |||||||||||||||||| |||||||||| |||  ||||||||||||| ||||| |||||||| ||||||||||||||||||||     
T  24144179 aattccaaatttaaaaattaagggactaaaatcgtatttcatcaaaatctctttttagctaaaaattttttgaacatggtatatgataagattttatgga 24144080  T
Q  101 gtccactgaagtatatagtcaatcaattccatctgct---aagtagatggatacaaagaagtttacataat 168  Q
    |||||||||||||||||||||||||||||||||| ||   ||| |||||||||||||||||||||||||||    
T  24144079 gtccactgaagtatatagtcaatcaattccatctactaagaagaagatggatacaaagaagtttacataat 24144009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 42394517 - 42394437
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||||||||||| |||||||| |  ||||||||| ||||  |||||| ||||||||||    
T  42394517 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctca 42394437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 53581960 - 53581876
Alignment:
Q  182 tagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||||||| ||||||| |||| || ||||||||||  ||||||||| ||||  ||| || ||||||||||    
T  53581960 tagaaaaatgttacatgaacactctttattcatacactccattgtacatcctatgtattagggatattttgataagttcatctca 53581876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 46941055 - 46941135
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  |||||||||||||   |||||||| | |||||||||| ||||  |||||| ||||||||||    
T  46941055 aaaatgttacatgaacaccctttattcctacatctcattgtacaccccatgtattagggatattttggtaagttcatctca 46941135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 54237098 - 54237178
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||||||||| | |||||||| |  ||||||||| ||||  |||||| ||||||||||    
T  54237098 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 54237178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 266
Target Start/End: Original strand, 25413673 - 25413763
Alignment:
Q  176 agattttagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||| ||| ||||||||||||||||||  ||||||||||||  | |||||||| || ||||||||| ||||  || ||| ||||||||||    
T  25413673 agattataggaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattagggatatttttgtaagttcatctca 25413763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 4190363 - 4190283
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  |||| || ||||  |||||||||| || ||||||||||||||  ||||||  |||||||||    
T  4190363 aaaatgttacatgaacaccctttaatcatacaccctattgtacaccttatgtattagagatattttggtaaattcatctca 4190283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 24688500 - 24688420
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  |||||| ||||| || |||||||| |  ||||||||| ||||  |||||| ||||||||||    
T  24688500 aaaatgttacatgaacaccctttatttctacactccattgtacaccctatgtattagggatattttggtaagttcatctca 24688420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 40808867 - 40808947
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||||| |||||  ||||||||||||  | |||||||| | |||||||||| ||||  |||||| ||||||||||    
T  40808867 aaaatgttacatcaacaccatttattcctacaccccattgtacaccccatgtattagggatattttggtaagttcatctca 40808947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 42100690 - 42100770
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||||||||    |||||||| | |||||||||| ||||  |||||| ||||||||||    
T  42100690 aaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctca 42100770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 45127026 - 45126946
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||||| |||||  ||||||| ||||| | |||||||| | |||||||||| ||||  |||||| ||||||||||    
T  45127026 aaaatgttacataaacaccctttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctca 45126946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 54246246 - 54246166
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||||||||  | |||||||| |  ||||||||||||||  || ||| ||||||||||    
T  54246246 aaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagagatatttttgtaagttcatctca 54246166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 27748563 - 27748645
Alignment:
Q  184 gaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||||||||||||| |||||||| ||||    ||| |||| || ||||||||| ||||  |||||| ||||||||||    
T  27748563 gaaaaatgttacatgaacaccttttattcatacacctcattatacaccttatgtattagggatattttggtaagttcatctca 27748645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 47191123 - 47191044
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||||||||    |||||||| | |||||||||||||||  ||| || ||||||||||    
T  47191123 aaaatgttacatgaacaccctttattcctacacctcattgtaca-cccatgtattagagatattttgataagttcatctca 47191044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 30735981 - 30736064
Alignment:
Q  183 agaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||||||||||||||||||||||||||||  | |||||||| |||||||||||| ||||  |||||| ||||||||||    
T  30735981 agaaaaatgttacatgaacactttttattcctacaccccattgtacacctcatgtattagtgatattttggtaagttcatctca 30736064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 7273433 - 7273353
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||||||||   ||||||||| | |||||||||||||||  |||||| ||||||||||    
T  7273433 aaaatgttacatgaacaccctttattcctacaccttattgtacaccccatgtattagagatattttggtaagttcatctca 7273353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 13743319 - 13743239
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||||||||||| |||||||| ||||| | |||||||| | |||||||||| ||||  |||||| ||||||||||    
T  13743319 aaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctca 13743239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 13748819 - 13748739
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||||||||||| |||||||| ||||| | |||||||| | |||||||||| ||||  |||||| ||||||||||    
T  13748819 aaaatgttacatgaacaccttttattcatacatccaattgtacaccccatgtattagggatattttggtaagttcatctca 13748739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 24204087 - 24204005
Alignment:
Q  184 gaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||||  ||||||||||||  ||||||||||   |||||||||| ||||  |||||| ||||||||||    
T  24204087 gaaaaatgttacatgaacaccatttattcctacaccctattgtacactccatgtattagggatattttggtaagttcatctca 24204005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 9698431 - 9698351
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||||||||| | |||||||| |  ||||||||| ||||  |||||| ||||||||||    
T  9698431 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 9698351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 21279931 - 21280011
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  |||||| |||||||| |||| ||||| |||||||||| ||||  ||||||  |||||||||    
T  21279931 aaaatgttacatgaacaccctttatttctacattccattgcacatcccatgtattagggatattttggtaaattcatctca 21280011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 26670107 - 26670027
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||||||||    |||||||| |||||||||||| ||||  |||||| ||||||||||    
T  26670107 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctca 26670027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 30014345 - 30014425
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||||||||| | ||| |||||| ||||||||||  |||  |||||| ||||||||||    
T  30014345 aaaatgttacatgaacaccctttattcctacatcccattatacatcccatgtattaggcatattttggtaagttcatctca 30014425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 5754905 - 5754985
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||||||||||| |||||||||||||| | |||||||||| ||| |||||| ||||  |||||| ||||||||||    
T  5754905 aaaatgttacatgaacaccttttattcctacatcccattgtacatcccatatattagggatattttggtaagttcatctca 5754985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 2546998 - 2547078
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||| |||||| ||||| || |||||||| |||||||||||| ||||  || ||| ||||||||||    
T  2546998 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttagtaagttcatctca 2547078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 18066823 - 18066755
Alignment:
Q  179 ttttagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagata 247  Q
    |||||| ||||||||||||||||||  |||| || |||||||||||||||||| |||||||||| ||||    
T  18066823 ttttaggaaaatgttacatgaacaccctttaatcatacattctattgtacatcccatgtattagggata 18066755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 11582768 - 11582848
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||||||||| | |||||||| |  ||||||||| ||||  |||||| ||||||||||    
T  11582768 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 11582848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 20148758 - 20148842
Alignment:
Q  182 tagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||||||||| |||||  ||||||| ||||| | |||||||| ||||| |||||| ||||  |||||| ||||||||||    
T  20148758 tagaaaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctca 20148842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 29801052 - 29800968
Alignment:
Q  182 tagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||||||||| |||||  ||||||| ||||| | |||||||| | |||||||||| ||||  |||||| ||||||||||    
T  29801052 tagaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctca 29800968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 36743581 - 36743501
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||||||||| | |||||||| |  ||||||||| ||||  |||||| ||||||||||    
T  36743581 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 36743501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 266
Target Start/End: Original strand, 26125635 - 26125717
Alignment:
Q  184 gaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||||||| |||||  ||||||| ||||||| |||||||| |  ||||||||| ||||  |||||| ||||||||||    
T  26125635 gaaaaatgttacataaacaccctttattcatacattccattgtacaccctatgtattagggatattttggtaagttcatctca 26125717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 30912662 - 30912580
Alignment:
Q  184 gaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||||  ||||||||||||  | ||||||||  ||||||||||| | ||  |||||| ||||||||||    
T  30912662 gaaaaatgttacatgaacaccctttattcctacaccccattgtacacttcatgtattaggggtattttggtaagttcatctca 30912580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 31384672 - 31384746
Alignment:
Q  192 ttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||  ||||||| |||||||||||||||| | ||||||||||  |||  |||||| ||||||||||    
T  31384672 ttacatgaacaccctttattcttacattctattgtacaccccatgtattaggaatattttggtaagttcatctca 31384746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 267
Target Start/End: Complemental strand, 2166061 - 2165980
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctcat 267  Q
    ||||| ||||||||||||  ||||||||||||  | |||||| | | |||||||||||||||  |||||| |||||||||||    
T  2166061 aaaatattacatgaacaccatttattcctacaccccattgtataccccatgtattagagatattttggtaagttcatctcat 2165980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 42295194 - 42295277
Alignment:
Q  183 agaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||||||||||||||  ||||||||||||    ||||||||   |||||||||| ||||  |||||| ||||||||||    
T  42295194 agaaaaatgttacatgaacaccctttattcctacacctcattgtacactccatgtattagggatattttggtaagttcatctca 42295277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 42699256 - 42699339
Alignment:
Q  183 agaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||||||||||||||  ||||||||||||  | |||||||| || ||||||||  ||||  || ||| ||||||||||    
T  42699256 agaaaaatgttacatgaacaccctttattcctacaccccattgtacaccttatgtattatggatatttttgtaagttcatctca 42699339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 30660840 - 30660762
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatct 264  Q
    ||||||||||||||||||  |||||| |||||| | |||||||| |  ||||||||| ||||  |||||| ||||||||    
T  30660840 aaaatgttacatgaacaccctttatttctacatcccattgtacaccctatgtattagggatattttggtaagttcatct 30660762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 29705364 - 29705444
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  |||||| |||||  | |||||||| | |||||||||| ||||  ||| || ||||||||||    
T  29705364 aaaatgttacatgaacaccctttatttctacaccccattgtacaccccatgtattagggatattttgataagttcatctca 29705444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 5015397 - 5015477
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||| |||||| ||||| || |||||||| |||||||||||| ||||  |||||| ||||||||||    
T  5015397 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctca 5015477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 35069718 - 35069803
Alignment:
Q  181 ttagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||| ||||||||||||||||||| ||||||||||||    |||||||| |||||||||||| ||||  |||||| ||||||||||    
T  35069718 ttaggaaaatgttacatgaacactctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctca 35069803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 4638301 - 4638217
Alignment:
Q  182 tagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||||||||||||||| |||||||| |||| || |||||||| | ||| |||||  ||||  |||||| ||||||||||    
T  4638301 tagaaaaatgttacatgaacaccttttattcatacactcaattgtacaccccatatattatggatattttggtaagttcatctca 4638217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 9216304 - 9216383
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  |||||||||| || |||||||||| | |||| ||||||||||  |||||| ||||||||||    
T  9216304 aaaatgttacatgaacaccctttattcctatatcctattgtaca-cccatgcattagagatattttggtaagttcatctca 9216383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 24001110 - 24001030
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||||||||| | |||||||| |  ||||||||| ||||  |||||| ||||||||||    
T  24001110 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 24001030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 42538529 - 42538449
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||||||||| | |||||||| |  ||||||||| ||||  |||||| ||||||||||    
T  42538529 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 42538449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 42972854 - 42972934
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||| ||||||   |||||||||||| || |||||||| |||||||||||| ||||  |||||| ||||||||||    
T  42972854 aaaatgttacctgaacatcctttattcctacactccattgtacacctcatgtattagggatattttggtaagttcatctca 42972934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 44326176 - 44326260
Alignment:
Q  182 tagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||||||||| |||||  ||||||| ||||| | |||||||| ||||| |||||| ||||  |||||| ||||||||||    
T  44326176 tagaaaaatgttacataaacaccctttattcatacatcccattgtacacctcatatattagggatattttggtaagttcatctca 44326260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 26898499 - 26898422
Alignment:
Q  187 aaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatct 264  Q
    ||||||||||||||||| |||||||| ||||  | |||||||||  |||||||||| ||||  |||||| ||||||||    
T  26898499 aaatgttacatgaacaccttttattcatacacccaattgtacattccatgtattagggatattttggtaagttcatct 26898422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 247
Target Start/End: Original strand, 39998410 - 39998471
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagata 247  Q
    |||||||||||||||||| ||||| || ||||| |||||||||| | |||||||||| ||||    
T  39998410 aaaatgttacatgaacacattttaatcatacatcctattgtacaccccatgtattagggata 39998471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 43343725 - 43343642
Alignment:
Q  183 agaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||||   |||||| |||||  |||||||||| | |||||||||| ||||  ||| || ||||||||||    
T  43343725 agaaaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctca 43343642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 10573749 - 10573807
Alignment:
Q  184 gaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattag 242  Q
    |||||||||||||| |||||  ||||||| ||||| |||||||||| | ||||||||||    
T  10573749 gaaaaatgttacataaacaccctttattcatacatcctattgtacaccccatgtattag 10573807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 44417034 - 44416952
Alignment:
Q  184 gaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||||||||||||   |||||| |||||  |||||||||| | |||||||||| ||||  ||| || ||||||||||    
T  44417034 gaaaaatgttacatgaacatcatttatttctacaccctattgtacaccccatgtattagggatattttgataagttcatctca 44416952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 48499060 - 48498980
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||| |||||| ||||| || |||||||| |||||||||||| ||||  |||||| ||||||||||    
T  48499060 aaaatgttacatgaacactctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatctca 48498980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 4401325 - 4401410
Alignment:
Q  182 tagaaaaatgttacatgaacact-ttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||| |||||||||||| ||||||||||||| |  |||||||| | |||||||||||||||  |||||| ||||||||||    
T  4401325 tagaaaaatgatacatgaacactcttttattcctacacttcattgtacaccccatgtattagagatattttggtaagttcatctca 4401410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 5489778 - 5489858
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||||||||| | |||||||| |  ||||||||| ||||  |||||| ||||||||||    
T  5489778 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 5489858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 266
Target Start/End: Complemental strand, 2497666 - 2497580
Alignment:
Q  180 tttagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||||||||||| |||||  ||||||| ||||||| |||||||| | ||| |||||  ||||  |||||| ||||||||||    
T  2497666 tttagaaaaatgttacataaacaccatttattcatacattccattgtacaccccatatattaaggatattttggtaagttcatctca 2497580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 50448358 - 50448280
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatct 264  Q
    ||||||||||||||||||| |||||| ||||| || |||||||| || ||||||||| ||||  || ||| ||||||||    
T  50448358 aaaatgttacatgaacactctttatttctacactccattgtacaccttatgtattagggatatttttgtaagttcatct 50448280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 43571184 - 43571104
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||||||||    |||||||| | |||||||||| ||||  |||||| ||||||||||    
T  43571184 aaaatgttacatgaacaccctttattcctacacctcattgtacaccccatgtattagggatattttggtaagttcatctca 43571104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 179 - 266
Target Start/End: Original strand, 7447821 - 7447907
Alignment:
Q  179 ttttagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||| |||||||||||||||||||   ||||||||||||| | |||||||| | ||||||||| |||||  ||| || ||||||||||    
T  7447821 tttttgaaaaatgttacatgaacatcctttattcctacatcccattgtaca-cccatgtattacagatattttgataagttcatctca 7447907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 35000211 - 35000155
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattag 242  Q
    |||||||||||||||||| ||||| || |||| ||||||||| |  |||||||||||    
T  35000211 aaaatgttacatgaacaccttttaatcatacactctattgtatacttcatgtattag 35000155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 264
Target Start/End: Complemental strand, 23519 - 23441
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatct 264  Q
    ||||||||| ||||||||  |||||||||||| || |||||||||| |||||||||||||||  |||||| ||||||||    
T  23519 aaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatct 23441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 12496958 - 12497036
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatct 264  Q
    ||||||||| ||||||||  |||||||||||| || |||||||||| |||||||||||||||  |||||| ||||||||    
T  12496958 aaaatgttatatgaacaccctttattcctacactccattgtacatcccatgtattagagatattttggtaagttcatct 12497036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 266
Target Start/End: Complemental strand, 43514787 - 43514704
Alignment:
Q  183 agaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||||||||||||||  |||||||||||| || ||||||||  ||||||||||| | ||  |||||| ||||||||||    
T  43514787 agaaaaatgttacatgaacaccctttattcctacactccattgtacacttcatgtattagggttattttggtaagttcatctca 43514704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 27550311 - 27550389
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatct 264  Q
    ||||||||||||||||||  |||||| ||||| || |||||||| |||||||||||| ||||  |||||| ||||||||    
T  27550311 aaaatgttacatgaacaccctttatttctacactccattgtacacctcatgtattagggatattttggtaagttcatct 27550389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 266
Target Start/End: Complemental strand, 48463553 - 48463468
Alignment:
Q  181 ttagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||| |||||||||||| |||||  ||||||| ||||||  |||||||||| |||||||||| ||||  |||||| ||||||||||    
T  48463553 ttaggaaaatgttacataaacaccatttattcatacatttcattgtacatcccatgtattagggatattttggtaagttcatctca 48463468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 1771364 - 1771284
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||||||||  | |||||||| | |||||||||||||||  ||| || ||||||||||    
T  1771364 aaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattagagatattttgataagttcatctca 1771284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 23204875 - 23204815
Alignment:
Q  187 aaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagata 247  Q
    |||||||||||||||||| ||||||||||||| | ||||||||||  ||||||||| ||||    
T  23204875 aaatgttacatgaacactctttattcctacatcccattgtacatcctatgtattagggata 23204815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 28982920 - 28982840
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  |||||| |||||  |||||||||||| ||| |||||| ||||  |||||| ||||||||||    
T  28982920 aaaatgttacatgaacaccctttatttctacaccctattgtacatcccatatattagggatattttggtaagttcatctca 28982840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 33703143 - 33703223
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  |||||| ||||||  ||||||||| | |||||||||| ||||  |||||| ||||||||||    
T  33703143 aaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctca 33703223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 55966444 - 55966364
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||||| |||||  ||||||| ||||| | |||||||||| |||||||||| ||||  |||||| ||||||||||    
T  55966444 aaaatgttacataaacaccctttattcatacatcccattgtacatcccatgtattagggatattttggtaagttcatctca 55966364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 266
Target Start/End: Complemental strand, 27893947 - 27893860
Alignment:
Q  179 ttttagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||| |||||  ||||||| ||||| | |||||||| | |||||||||| ||||  ||||||  |||||||||    
T  27893947 ttttagaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctca 27893860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 247
Target Start/End: Complemental strand, 45490411 - 45490350
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagata 247  Q
    |||||||||||||||||| |||||||  ||||| | |||||||| |||||||||||| ||||    
T  45490411 aaaatgttacatgaacacattttatttatacatccaattgtacacctcatgtattagggata 45490350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 27864566 - 27864646
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||||| |||||  ||||||| ||||| | |||||||| | |||||||||| ||||  |||||| ||||||||||    
T  27864566 aaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaagttcatctca 27864646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 31680899 - 31680984
Alignment:
Q  181 ttagaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||| | |||||  ||||||| ||||||| |||||||| | | | |||||| ||||  |||||| ||||||||||    
T  31680899 ttagaaaaatgttacgtaaacaccatttattcatacattccattgtacaccccgtatattagggatattttggtaagttcatctca 31680984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 25051695 - 25051775
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||| ||||||||||  ||||||||||||  | |||||||| |  ||||||||| ||||  |||||| ||||||||||    
T  25051695 aaaatgtcacatgaacacactttattcctacaccccattgtacaccctatgtattagggatattttggtaagttcatctca 25051775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 266
Target Start/End: Original strand, 39631095 - 39631183
Alignment:
Q  179 ttttagaaaaatgttacatgaacact-ttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||| |||||||| ||||||||| |  |||||||||||||    |||||||| |||||||||||| ||||  |||||| ||||||||||    
T  39631095 tttttgaaaaatgatacatgaacccccttttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctca 39631183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 112657 - 112737
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||||||||||| |||||||| |  ||||||||| ||||  |||||| ||||||||||    
T  112657 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctca 112737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 19047159 - 19047239
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||||||||||| |||||||| |  ||||||||| ||||  |||||| ||||||||||    
T  19047159 aaaatgttacatgaacaccctttattcctacattccattgtacaccctatgtattagggatattttggtaagttcatctca 19047239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 43490503 - 43490418
Alignment:
Q  182 tagaaaaatgttacatgaacactttttattcctacattctattgtaca-tctcatgtattagagatagattggtatgttcatctcat 267  Q
    ||||||||||||||||||||||  ||||||||||||| | |||||||| ||| ||||||||| ||||  |||||| |||||||||||    
T  43490503 tagaaaaatgttacatgaacaccctttattcctacatcccattgtacactct-atgtattagggatattttggtaagttcatctcat 43490418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 30838634 - 30838714
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  |||||| ||||||  ||||||||| | |||||||||| ||||  |||||| ||||||||||    
T  30838634 aaaatgttacatgaacaccctttatttctacatcttattgtacaccccatgtattagggatattttggtaagttcatctca 30838714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 1750416 - 1750496
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||||||||  | |||||||| |  ||||||||| ||||  || ||| ||||||||||    
T  1750416 aaaatgttacatgaacaccctttattcctacaccccattgtacaccctatgtattagggatatttttgtaagttcatctca 1750496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 4764824 - 4764744
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    |||||||||||| |||||  ||||||||||||  |||||||||| | ||||||||| | |||  ||||||  |||||||||    
T  4764824 aaaatgttacatcaacaccatttattcctacaccctattgtacaccccatgtattataaatattttggtaaattcatctca 4764744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 43335861 - 43335781
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||| |||||||   ||||||||||||    |||||||||| |||||||||| ||||  |||||| ||||||||||    
T  43335861 aaaatgttatatgaacatcatttattcctacacctcattgtacatcccatgtattagggatattttggtaagttcatctca 43335781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 687 - 767
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||||||||    |||||||| |||||||||||| ||||  |||||| ||||||||||    
T  687 aaaatgttacatgaacaccctttattcctacacctcattgtacacctcatgtattagggatattttggtaagttcatctca 767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 2614747 - 2614667
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||||||||| | |||||||| |  ||||||||| ||||  |||||| ||||||||||    
T  2614747 aaaatgttacatgaacaccctttattcctacatcccattgtacaccctatgtattagggatattttggtaagttcatctca 2614667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 22512307 - 22512387
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  |||||||||||| || ||||||||   |||||||||| ||||  |||||| ||||||||||    
T  22512307 aaaatgttacatgaacaccctttattcctacactccattgtacactccatgtattagggatattttggtaagttcatctca 22512387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 7617135 - 7617215
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  ||||||| |||| || ||| |||| | |||||||||| ||||  |||||| ||||||||||    
T  7617135 aaaatgttacatgaacaccctttattcatacactccattatacaccccatgtattagggatattttggtaagttcatctca 7617215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 18033984 - 18034064
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  |||||||||||| || |||||||| |  ||||||||| ||||  || ||| ||||||||||    
T  18033984 aaaatgttacatgaacaccctttattcctacactccattgtacaccctatgtattagggatatttttgtaagttcatctca 18034064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 266
Target Start/End: Original strand, 5256994 - 5257077
Alignment:
Q  183 agaaaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||| |||||  ||||||| ||||| | |||||||| | |||||||||| ||||  ||||||  |||||||||    
T  5256994 agaaaaatgttacataaacaccatttattcatacatcccattgtacaccccatgtattagggatattttggtaatttcatctca 5257077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 33855141 - 33855085
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattag 242  Q
    ||||||||||||||||||  ||||||||||||  | |||||||| | ||||||||||    
T  33855141 aaaatgttacatgaacaccctttattcctacaccccattgtacaccccatgtattag 33855085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 14286 - 14206
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  |||||| |||||  | ||||||||||  ||||||||| ||||  || ||| ||||||||||    
T  14286 aaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctca 14206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 24614 - 24534
Alignment:
Q  186 aaaatgttacatgaacactttttattcctacattctattgtacatctcatgtattagagatagattggtatgttcatctca 266  Q
    ||||||||||||||||||  |||||| |||||  | ||||||||||  ||||||||| ||||  || ||| ||||||||||    
T  24614 aaaatgttacatgaacaccctttatttctacaccccattgtacatcctatgtattagggatatttttgtaagttcatctca 24534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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