View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4511_low_16 (Length: 240)
Name: NF4511_low_16
Description: NF4511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4511_low_16 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 83 - 240
Target Start/End: Original strand, 11230213 - 11230370
Alignment:
| Q |
83 |
atagaccatctatcgggaatgtagtgagagatggaatattccagagttccaagcgttgaagacaagtgctgttcataagcattttaggaagagacatcag |
182 |
Q |
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| T |
11230213 |
atagaccatctatcgggaatgtagtgagagatggaatattccagagttccaaacgttgaagacaagtgctgttcataagcattttaggaagagacatcag |
11230312 |
T |
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| Q |
183 |
tgtatgatcccaaccaatcgatacatgtcgtagcagagacggggaatcactcctaagc |
240 |
Q |
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| T |
11230313 |
tgtatgatcccaaccaatcgatacatgtcgtagcagagacggggaatcactcctaagc |
11230370 |
T |
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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 11230095 - 11230149
Alignment:
| Q |
19 |
gtgtaattgctccacgtatcaagaggaagaaacgataaattctcgagtacttgca |
73 |
Q |
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| T |
11230095 |
gtgtaattgctccacgtatcaagaggaagaaacgataaattctcgagtacttgca |
11230149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 152
Target Start/End: Complemental strand, 10502879 - 10502832
Alignment:
| Q |
105 |
agtgagagatggaatattccagagttccaagcgttgaagacaagtgct |
152 |
Q |
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| T |
10502879 |
agtgagagatggaatatcatagagttccaagtgttgaagacaagtgct |
10502832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 31677496 - 31677576
Alignment:
| Q |
107 |
tgagagatggaatattccagagttccaagcgttgaagacaagtgctgttcataagcattttaggaagagacatcagtgtat |
187 |
Q |
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| T |
31677496 |
tgagatatggaatattataaagttccaagtgttggagacaagtgctgcttataatcattttaggtagagacagaagtgtat |
31677576 |
T |
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