View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4511_low_19 (Length: 218)
Name: NF4511_low_19
Description: NF4511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4511_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 4 - 210
Target Start/End: Complemental strand, 9796491 - 9796285
Alignment:
| Q |
4 |
tgtttcgtgggttgagcccaactgcattattcaatatggttgcgcaaatgttcaagtttaaaaggttacaattttgcgggggtgtgaccggaatcggtgg |
103 |
Q |
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| T |
9796491 |
tgtttcgtgggttgagcacaactacattattcaatactttggcgcaaatgttcaagtttaaaaggttacaattttgcgggggtgtcaccggaatcggtgg |
9796392 |
T |
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| Q |
104 |
tggtgttgaaggaggtgtcgtaggaattgacggtggtgtggaaggaggtgtcgtaggtgggggcgtcaaaggtggaggtgcggaaggagttatgataggt |
203 |
Q |
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| T |
9796391 |
tggtgtagaaggaggtgtcctaggaattgacggtggtgtggaaggaggtgtcgtaggtgggggtgtcgaaggtggaggtgcggaaggagttatgataggt |
9796292 |
T |
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| Q |
204 |
gatgatg |
210 |
Q |
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| T |
9796291 |
ggtgatg |
9796285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 4 - 210
Target Start/End: Complemental strand, 9802492 - 9802286
Alignment:
| Q |
4 |
tgtttcgtgggttgagcccaactgcattattcaatatggttgcgcaaatgttcaagtttaaaaggttacaattttgcgggggtgtgaccggaatcggtgg |
103 |
Q |
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| T |
9802492 |
tgtttcgtgggttgagcacaactacattattcaatactttggcgcaaatgttcaagtttaaaaggttacaattttgcgggggtgtcaccggaatcggtgg |
9802393 |
T |
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| Q |
104 |
tggtgttgaaggaggtgtcgtaggaattgacggtggtgtggaaggaggtgtcgtaggtgggggcgtcaaaggtggaggtgcggaaggagttatgataggt |
203 |
Q |
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| T |
9802392 |
tggtgtagaaggaggtgtcctaggaattgacggtggtgtggaaggaggtgtcgtaggtgggggtgtcgaaggtggaggtgcggaaggagttatgataggt |
9802293 |
T |
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| Q |
204 |
gatgatg |
210 |
Q |
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| T |
9802292 |
ggtgatg |
9802286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 9757185 - 9757118
Alignment:
| Q |
93 |
ggaatcggtggtggtgttgaaggaggtgtcgtaggaattgacggtggtgtggaaggaggtgtcgtagg |
160 |
Q |
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| T |
9757185 |
ggaattggtggtggtgtcgaaggaggtgtcctaggatttggtggtggtgtggtaggaggtgtcctagg |
9757118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 9757218 - 9757151
Alignment:
| Q |
93 |
ggaatcggtggtggtgttgaaggaggtgtcgtaggaattgacggtggtgtggaaggaggtgtcgtagg |
160 |
Q |
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| T |
9757218 |
ggaattggtggtggtgtaaaaggaggtgtcctaggaattggtggtggtgtcgaaggaggtgtcctagg |
9757151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 9757065 - 9756998
Alignment:
| Q |
93 |
ggaatcggtggtggtgttgaaggaggtgtcgtaggaattgacggtggtgtggaaggaggtgtcgtagg |
160 |
Q |
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| T |
9757065 |
ggaattggtggtggtatggtaggaggtgtcctaggatttgtcggtggtgtggtaggaggtgtcctagg |
9756998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 9756918 - 9756865
Alignment:
| Q |
99 |
ggtggtggtgttgaaggaggtgtcgtaggaattgacggtggtgtggaaggaggt |
152 |
Q |
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| T |
9756918 |
ggtggtggtgtcgaaggaggtgtcataggatttggtggtggtgtggtaggaggt |
9756865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 9757092 - 9757031
Alignment:
| Q |
99 |
ggtggtggtgttgaaggaggtgtcgtaggaattgacggtggtgtggaaggaggtgtcgtagg |
160 |
Q |
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| T |
9757092 |
ggtggtggtgtggtaggaggtgtcctaggaattggtggtggtatggtaggaggtgtcctagg |
9757031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 9756831 - 9756775
Alignment:
| Q |
99 |
ggtggtggtgttgaaggaggtgtcgtaggaattgacggtggtgtggaaggaggtgtc |
155 |
Q |
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| T |
9756831 |
ggtggtggtgtggtaggaggtgtcctgggatttgtcggtggtgtggtaggaggtgtc |
9756775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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