View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4511_low_3 (Length: 519)

Name: NF4511_low_3
Description: NF4511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4511_low_3
NF4511_low_3
[»] chr5 (3 HSPs)
chr5 (386-505)||(3594138-3594257)
chr5 (116-296)||(3594313-3594494)
chr5 (19-122)||(3595321-3595424)
[»] chr7 (4 HSPs)
chr7 (19-146)||(13593792-13593919)
chr7 (19-120)||(26753751-26753852)
chr7 (19-147)||(29130742-29130870)
chr7 (19-119)||(22910034-22910134)
[»] chr3 (4 HSPs)
chr3 (19-147)||(20672415-20672543)
chr3 (78-120)||(8725866-8725908)
chr3 (78-120)||(9077753-9077795)
chr3 (83-147)||(53580205-53580269)
[»] chr4 (2 HSPs)
chr4 (19-147)||(48027229-48027357)
chr4 (19-119)||(21753949-21754049)
[»] chr2 (2 HSPs)
chr2 (19-147)||(15746691-15746819)
chr2 (83-120)||(18580666-18580703)
[»] chr1 (2 HSPs)
chr1 (19-118)||(32109272-32109371)
chr1 (50-119)||(32922001-32922070)
[»] scaffold0913 (1 HSPs)
scaffold0913 (21-118)||(2545-2642)
[»] scaffold0898 (1 HSPs)
scaffold0898 (21-118)||(2959-3056)
[»] chr8 (2 HSPs)
chr8 (19-120)||(10257916-10258017)
chr8 (19-162)||(8782410-8782553)
[»] chr6 (2 HSPs)
chr6 (20-120)||(15609016-15609116)
chr6 (19-118)||(32751315-32751414)


Alignment Details
Target: chr5 (Bit Score: 116; Significance: 9e-59; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 386 - 505
Target Start/End: Complemental strand, 3594257 - 3594138
Alignment:
Q  386 tggaaacatacgtttgtatcatttgtggatctacttattcctcttcctcatttaaataattttataattccctttcacatgaatgaacatgttcatactg 485  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3594257 tggaaacatacgtttgtataatttgtggatctacttattcctcttcctcatttaaataattttataattccctttcacatgaatgaacatgttcatactg 3594158  T
Q  486 taagcattcaattcgattcc 505  Q
    ||||||||||||||||||||    
T  3594157 taagcattcaattcgattcc 3594138  T

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Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 116 - 296
Target Start/End: Complemental strand, 3594494 - 3594313
Alignment:
Q  116 tatcctatatgctaatagagatattcctctagattacataagagtct-ctattgcattttgtagcaaacaattagtgaacttagtgactagaacccaca- 213  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||| |||||||||||||||||||     
T  3594494 tatcctacatgctaatagagatattcctctagattacataagagtctggtattgcattttgtagccaacaattagtgaatttagtgactagaacccacat 3594395  T
Q  214 nnnnnnnnccgacaatagaacccacacatttttaaacggtagttgaacctcacctctgcatataatatgcagtatatccctac 296  Q
             |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||    
T  3594394 tttttttttcgacaatagaacccacacatttttaaac-gtagttgaacctcgcctctgcatataatatgcaatatatccctac 3594313  T

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Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 3595424 - 3595321
Alignment:
Q  19 ctaaatttattctcaaaactaaaagaagatggaggataggcggtggtgagaaaattttggttttgtataacaagtgaattgcaaatgatgttacacttat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3595424 ctaaatttattctcaaaactaaaagaagatggaggataggcggtggtgagaaaattttggttttgtataacaagtgaattgcaaatgatgttacacttat 3595325  T
Q  119 ccta 122  Q
    ||||    
T  3595324 ccta 3595321  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 13593792 - 13593919
Alignment:
Q  19 ctaaatttattctcaaaactaaaagaagatggaggataggcggtggtgagaaaattttggttttgtataacaagtgaattgcaaatgatgttacacttat 118  Q
    ||||||||||||||||| ||  ||| |||||||||||||| | ||||||  | || | ||||| |||||||||||| ||| |||||||| ||||||||||    
T  13593792 ctaaatttattctcaaagctggaagcagatggaggataggtgatggtgatgatatctcggtttggtataacaagtggattacaaatgatattacacttat 13593891  T
Q  119 cctatatgctaatagagatattcctcta 146  Q
    |||| ||||| || ||||| ||||||||    
T  13593892 cctacatgctgatggagattttcctcta 13593919  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 26753751 - 26753852
Alignment:
Q  19 ctaaatttattctcaaaactaaaagaagatggaggataggcggtggtgagaaaattttggttttgtataacaagtgaattgcaaatgatgttacacttat 118  Q
    ||||||||||| | ||| || |||| |||||||||||||| | ||||||| | || |  |||| |||||||||||| |||||||||||||||||||||||    
T  26753751 ctaaatttattttgaaagctgaaagtagatggaggataggtgatggtgaggatatctcagtttggtataacaagtggattgcaaatgatgttacacttat 26753850  T
Q  119 cc 120  Q
    ||    
T  26753851 cc 26753852  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 29130870 - 29130742
Alignment:
Q  19 ctaaatttattctcaaaactaaaagaagatggaggataggcggtggtgagaaaattttggttttgtataacaagtgaattgcaaatgatgttacacttat 118  Q
    ||||||||||||| |||  | |||| |||| || |||||| | ||||||| | || |  |||| |||||||||||| |||||||||||||||||||||||    
T  29130870 ctaaatttattctgaaagttgaaagtagatagaagataggtgatggtgaggatatctcagtttggtataacaagtggattgcaaatgatgttacacttat 29130771  T
Q  119 cctatatgctaatagagatattcctctag 147  Q
    ||   |||||||| || || |||||||||    
T  29130770 cccgcatgctaatggacattttcctctag 29130742  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 22910034 - 22910134
Alignment:
Q  19 ctaaatttattctcaaaactaaaagaagatggaggataggcggtggtgagaaaattttggttttgtataacaagtgaattgcaaatgatgttacacttat 118  Q
    ||||||||||||||||| ||  ||| ||||||||||||||   ||||||| | |  |  || | |||||||||||| |||| ||||||||||||||||||    
T  22910034 ctaaatttattctcaaagctggaagcagatggaggataggtaatggtgaggatacctcagtatggtataacaagtggattgaaaatgatgttacacttat 22910133  T
Q  119 c 119  Q
    |    
T  22910134 c 22910134  T

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Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 20672415 - 20672543
Alignment:
Q  19 ctaaatttattctcaaaactaaaagaagatggaggataggcggtggtgagaaaattttggttttgtataacaagtgaattgcaaatgatgttacacttat 118  Q
    ||||||||||||||||| ||| ||| |||||||||||||  | ||||||| | || |  |||| |||||||||||| || | ||||||||||||||||||    
T  20672415 ctaaatttattctcaaagctagaagcagatggaggatagttgatggtgaggatatctcagtttggtataacaagtggatcggaaatgatgttacacttat 20672514  T
Q  119 cctatatgctaatagagatattcctctag 147  Q
    ||   |||||||| ||||| |||||||||    
T  20672515 cccgcatgctaatggagattttcctctag 20672543  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 8725866 - 8725908
Alignment:
Q  78 gttttgtataacaagtgaattgcaaatgatgttacacttatcc 120  Q
    |||| |||||||||||| |||||||||||||||||||||||||    
T  8725866 gtttggtataacaagtggattgcaaatgatgttacacttatcc 8725908  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 9077753 - 9077795
Alignment:
Q  78 gttttgtataacaagtgaattgcaaatgatgttacacttatcc 120  Q
    |||| |||||||||||| |||||||||||||||||||||||||    
T  9077753 gtttggtataacaagtggattgcaaatgatgttacacttatcc 9077795  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 53580205 - 53580269
Alignment:
Q  83 gtataacaagtgaattgcaaatgatgttacacttatcctatatgctaatagagatattcctctag 147  Q
    |||||||||||| ||||||||||| ||||||||||||  | ||||||||  |||| |||||||||    
T  53580205 gtataacaagtggattgcaaatgaagttacacttatcgcacatgctaatgaagattttcctctag 53580269  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 48027357 - 48027229
Alignment:
Q  19 ctaaatttattctcaaaactaaaagaagatggaggataggcggtggtgagaaaattttggttttgtataacaagtgaattgcaaatgatgttacacttat 118  Q
    ||||||||||||||||| ||  ||| |||||||||||||||| ||||||  | || |  |||| ||||||||| || |||||||||||| || |||||||    
T  48027357 ctaaatttattctcaaagctggaagcagatggaggataggcgatggtgatgatatctcagtttggtataacaactggattgcaaatgatatttcacttat 48027258  T
Q  119 cctatatgctaatagagatattcctctag 147  Q
    || | ||||| || ||||| |||||||||    
T  48027257 cccacatgctgatggagattttcctctag 48027229  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 21754049 - 21753949
Alignment:
Q  19 ctaaatttattctcaaaactaaaagaagatggaggataggcggtggtgagaaaattttggttttgtataacaagtgaattgcaaatgatgttacacttat 118  Q
    ||||||||||||||||| || |||| ||| |||||||||||| || |||  | || |  |||| || ||||||||| |||||||||||||||||||||||    
T  21754049 ctaaatttattctcaaagctgaaagcagaaggaggataggcgatgctgatgatatctctgtttggtgtaacaagtggattgcaaatgatgttacacttat 21753950  T
Q  119 c 119  Q
    |    
T  21753949 c 21753949  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 15746819 - 15746691
Alignment:
Q  19 ctaaatttattctcaaaactaaaagaagatggaggataggcggtggtgagaaaattttggttttgtataacaagtgaattgcaaatgatgttacacttat 118  Q
    ||||||||||||||||| ||  ||| ||||||||||||||   ||||||| | || |  ||||  ||||||||||| |||||||||||||||||||||||    
T  15746819 ctaaatttattctcaaagctggaagtagatggaggataggtaatggtgaggatatctcagtttgatataacaagtggattgcaaatgatgttacacttat 15746720  T
Q  119 cctatatgctaatagagatattcctctag 147  Q
    || | |||||||  ||||| | |||||||    
T  15746719 cccacatgctaacggagatttccctctag 15746691  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 18580703 - 18580666
Alignment:
Q  83 gtataacaagtgaattgcaaatgatgttacacttatcc 120  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  18580703 gtataacaagtaaattgcaaatgatgttacatttatcc 18580666  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 32109272 - 32109371
Alignment:
Q  19 ctaaatttattctcaaaactaaaagaagatggaggataggcggtggtgagaaaattttggttttgtataacaagtgaattgcaaatgatgttacacttat 118  Q
    ||||||||||||||||| || |||| ||||||| |||||| | ||||||| | || | | ||| ||||||||| |  |||||||||||||||||||||||    
T  32109272 ctaaatttattctcaaagctgaaagcagatggaagataggtgatggtgaggatatctcgatttagtataacaaatatattgcaaatgatgttacacttat 32109371  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 32922001 - 32922070
Alignment:
Q  50 gaggataggcggtggtgagaaaattttggttttgtataacaagtgaattgcaaatgatgttacacttatc 119  Q
    ||||||||| | ||||||| | || | |||||  |||||||| || ||||||||||||||||||||||||    
T  32922001 gaggataggtgatggtgaggatatctaggtttgatataacaaatggattgcaaatgatgttacacttatc 32922070  T

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Target: scaffold0913 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 2545 - 2642
Alignment:
Q  21 aaatttattctcaaaactaaaagaagatggaggataggcggtggtgagaaaattttggttttgtataacaagtgaattgcaaatgatgttacacttat 118  Q
    |||||||||||||||  |  ||| |||| ||||||| | |  |||||| | |||| ||||| |||||||||||| |||||||||||||||||||||||    
T  2545 aaatttattctcaaagttggaagcagatagaggatatgtgacggtgaggatatttaggtttggtataacaagtgcattgcaaatgatgttacacttat 2642  T

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Target: scaffold0898 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 3056 - 2959
Alignment:
Q  21 aaatttattctcaaaactaaaagaagatggaggataggcggtggtgagaaaattttggttttgtataacaagtgaattgcaaatgatgttacacttat 118  Q
    |||||||||||||||  |  ||| |||| ||||||| | |  |||||| | |||| ||||| |||||||||||| |||||||||||||||||||||||    
T  3056 aaatttattctcaaagttggaagcagatagaggatatgtgacggtgaggatatttaggtttggtataacaagtgcattgcaaatgatgttacacttat 2959  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 10257916 - 10258017
Alignment:
Q  19 ctaaatttattctcaaaactaaaagaagatggaggataggcggtggtgagaaaattttggttttgtataacaagtgaattgcaaatgatgttacacttat 118  Q
    ||||||||||||||||| ||  ||| |||||||||||||||| |  |||  | || ||| |||  ||||||||||| |||||||||||| ||||||||||    
T  10257916 ctaaatttattctcaaagctggaagcagatggaggataggcgatcatgatgatatcttgatttgttataacaagtggattgcaaatgatattacacttat 10258015  T
Q  119 cc 120  Q
    ||    
T  10258016 cc 10258017  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 8782410 - 8782553
Alignment:
Q  19 ctaaatttattctcaaaactaaaagaagatggaggataggcggtggtgagaaaattttggttttgtataacaagtgaattgcaaatgatgttacacttat 118  Q
    ||||||||||||||||   |  ||| ||||||| |||||| | ||||||| | || | ||||| ||||||||| || ||||||||||||||||||||||     
T  8782410 ctaaatttattctcaatgttggaagcagatggatgataggtgatggtgaggatatctcggtttggtataacaaatggattgcaaatgatgttacacttaa 8782509  T
Q  119 cctatatgctaatagagatattcctctagattacataagagtct 162  Q
    || | | ||| || || || ||||||||| | || |||||||||    
T  8782510 cccacaggctgatggaaattttcctctagctgacctaagagtct 8782553  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 15609016 - 15609116
Alignment:
Q  20 taaatttattctcaaaactaaaagaagatggaggataggcggtggtgagaaaattttggttttgtataacaagtgaattgcaaatgatgttacacttatc 119  Q
    ||||||||||||||||  |  ||  |||||||||||||| | || |||  | || | ||||| |||||||||||| ||||||| ||||||||||||||||    
T  15609016 taaatttattctcaaagttggaatcagatggaggataggtgatgatgatgatatctcggtttggtataacaagtggattgcaactgatgttacacttatc 15609115  T
Q  120 c 120  Q
    |    
T  15609116 c 15609116  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 32751414 - 32751315
Alignment:
Q  19 ctaaatttattctcaaaactaaaagaagatggaggataggcggtggtgagaaaattttggttttgtataacaagtgaattgcaaatgatgttacacttat 118  Q
    |||| |||||||||||| ||| ||  ||||||| |||||| | ||||||| | || | | ||| ||||||||| || ||| |||||||||||||||||||    
T  32751414 ctaagtttattctcaaagctagaaacagatggaagataggtgatggtgaggatatctcgatttggtataacaattggatttcaaatgatgttacacttat 32751315  T

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