View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4511_low_5 (Length: 477)
Name: NF4511_low_5
Description: NF4511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4511_low_5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 64 - 477
Target Start/End: Original strand, 47116595 - 47117008
Alignment:
| Q |
64 |
attatttggtggaaaactggtaaggaaagagaaaatgaaagaaattatttgtgctaattgtggtattaattactgaaagttcggggagacagttacaaag |
163 |
Q |
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| T |
47116595 |
attatttggtggaaaactggtaaggaaagagaaaatgaaagaaattatttgtgctaattgtggtattaattactgaaagttcggggagacagttacaaag |
47116694 |
T |
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| Q |
164 |
aaaatttccacgtcatacatctcattcaatgatgttatgttaatgaacgaatccccaatccttccacaatagatggacaccactccaagcttcctcatac |
263 |
Q |
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| T |
47116695 |
aaaagttccacgtcatacatctcattcaatgatgttatgttaatgaacgaatccccaatccttccacaatagatggacaccactccaagcttcctcatac |
47116794 |
T |
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| Q |
264 |
ccttgttatttcatttccttatgatatctcnnnnnnnctgacattgttttgtttcatcgcttctcaggtaattacaatagttatattttatcaaagatat |
363 |
Q |
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| T |
47116795 |
ccttgttatttcatttccttatgatatctctttttttctgacattgttttgtttcatcgcttctcaggtaattacaatagttatattttatcaaagatat |
47116894 |
T |
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| Q |
364 |
tcaataaccaatttcttttatatctttagtttcaattcaaggagataaatattcataccttttaacgatcaaatcacaaagcaaggtaagcaatatcaac |
463 |
Q |
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| T |
47116895 |
tcaataaccaatttcttttatatctttagtttcaattcaaggagataaatattcataccttttaacgatcaaatcacaaagcaaggtaagcaatatcaac |
47116994 |
T |
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| Q |
464 |
gtatcaatgactcg |
477 |
Q |
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| T |
47116995 |
gtatcaatgactcg |
47117008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 47116548 - 47116577
Alignment:
| Q |
18 |
tttcaaatcacataatatagtctattgaga |
47 |
Q |
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| T |
47116548 |
tttcaaatcacataatatagtctattgaga |
47116577 |
T |
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