View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4511_low_6 (Length: 444)
Name: NF4511_low_6
Description: NF4511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4511_low_6 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 45210308 - 45209869
Alignment:
| Q |
1 |
ccaacaattatagacttgcgccctggaacgtcctataataaacaatttgcaaattgctgcaaaggtggtgtactaagaacatgggcacaagatccgccaa |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45210308 |
ccaacaattatagacttgcaccctggaacgccctataataaacaatttgcaaattgctgcaaaggtggtgtactaagaacatgggcacaagatccgccaa |
45210209 |
T |
|
| Q |
101 |
atgcagttgcagcgtttcaagtcagtgtcggtagagctggcaataacaaaactgccatcatagcgccgcagaatttcactttgaaaacaccaggaccagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45210208 |
atgcagttgcagcgtttcaagtcagtgtcggtagagctggcaataacaaaactgccatcatagcgccgcagaatttcactttgaaaacaccaggaccagg |
45210109 |
T |
|
| Q |
201 |
ttatacatgcaaccaaccaaaaattgcggaacttactgaattcacatcaccgaacgaaaggagagtgactgaagcaatttgtaagtatattttgtaaacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45210108 |
ttatacatgcaaccaaccaaaaattgcggaacttactgaattcacatcaccgaacgaaaggagagtgactgaagcaatttgtaagtatattttgtaaacc |
45210009 |
T |
|
| Q |
301 |
tacgactaccaattctcctaagttgtcgtataattatcagctctgtttgaataaataacttaatttagcacttaattatagcatagactatttctatgac |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45210008 |
tacgactaccaattctcctaagttgtcgtataattatcagctctgtttgaataaataacttaatttagcac----ttatagcatagactatttctatgac |
45209913 |
T |
|
| Q |
401 |
aacacatattatgatttacttataccttaactaacattactctg |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45209912 |
aacacatattatgatttacttataccttaattaacattactctg |
45209869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 209
Target Start/End: Complemental strand, 5541082 - 5540908
Alignment:
| Q |
35 |
ataataaacaatttgcaaattgctgcaaaggtggtgtactaagaacatgggcacaagatccgccaaatgcagttgcagcgtttcaagtcagtgtcggtag |
134 |
Q |
| |
|
||||| ||||| |||||||||| |||| ||| ||||| || || |||||| ||| ||||| |||||| ||| |||| ||||||||||| |||| ||| |
|
|
| T |
5541082 |
ataatcaacaaattgcaaattgttgcagaggcggtgttcttagctcatgggaacaggatccaataaatgcggtttcagcatttcaagtcagcgtcgatag |
5540983 |
T |
|
| Q |
135 |
agctgg--caa-taacaaaactgccatcatagcgccgcagaatttcactttgaaaacaccaggaccaggttatacatg |
209 |
Q |
| |
|
|||||| ||| ||||||||||| ||| | |||| | |||||||| |||||| |||| ||||||||||||||||| |
|
|
| T |
5540982 |
agctggtacaactaacaaaactg---tcaaactgccgaaaaatttcaccttgaaagcacctggaccaggttatacatg |
5540908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 142
Target Start/End: Original strand, 5549722 - 5549816
Alignment:
| Q |
48 |
tgcaaattgctgcaaaggtggtgtactaagaacatgggcacaagatccgccaaatgcagttgcagcgtttcaagtcagtgtcggtagagctggca |
142 |
Q |
| |
|
||||||||| ||||||||||| ||||| || |||||||||| ||||| ||||||||||||| | ||||| || | ||| ||||||||||||| |
|
|
| T |
5549722 |
tgcaaattgttgcaaaggtggagtactcagctcatgggcacaggatccaacaaatgcagttgcgtcatttcaggttattgttggtagagctggca |
5549816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 137
Target Start/End: Original strand, 5007166 - 5007256
Alignment:
| Q |
47 |
ttgcaaattgctgcaaaggtggtgtactaagaacatgggcacaagatccgccaaatgcagttgcagcgtttcaagtcagtgtcggtagagc |
137 |
Q |
| |
|
||||||||||||||||||||||||| || || ||||||| |||||||| | | ||||||| ||||||||| ||||||| |||||||| |
|
|
| T |
5007166 |
ttgcaaattgctgcaaaggtggtgtgcttagttcatgggctcaagatcctaccatggcagttggggcgtttcaaatcagtgttggtagagc |
5007256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University