View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4511_low_7 (Length: 432)
Name: NF4511_low_7
Description: NF4511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4511_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 39 - 408
Target Start/End: Original strand, 28559721 - 28560094
Alignment:
| Q |
39 |
ttaattggagaaatcgatgaaagaaagaagacctgttggtgattggataggattattgggaagagagagcgaggtgagagttaggccataaaataagcga |
138 |
Q |
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| T |
28559721 |
ttaattggagaaatcgatgaaagaaagaagacctgttggtgattggataggattattgggaagagagagcgaggtgagagttaggccataaaataagcga |
28559820 |
T |
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| Q |
139 |
aagaatgtgcgagacaagcgtttaaggttttcagataatagaacaacgaagctctctttgtgtttgtgttatgttgcgaatcaatgaaatcgagtgacta |
238 |
Q |
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| T |
28559821 |
aagaatgtgcgagacaagcgtttaaggttttcagataatagaacaacgaagctctctttgtgtttgtgttatgttgcgaatcaatgaaatcgagtgacta |
28559920 |
T |
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| Q |
239 |
gtgaaaaacaatgttgcgttccatttggccccctcgtgc-----atcgtaggtttctttagaatgtacacgggtgtgggtcgacccgccaactcggacac |
333 |
Q |
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| T |
28559921 |
gtgaaaaacaatgttgcgttccattt-gccccctcgtgcatcgtatcgtaggtttctttagaatgtacacgggtgtgggtcgacccgccaactcggacac |
28560019 |
T |
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| Q |
334 |
ccaaaggaatatttatccgtatttagtccacctcgatcactcaaaccatattttagtgtccaaaattcctccgtt |
408 |
Q |
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| T |
28560020 |
ccaaaccaatatttatctgtatttaatcgacctcgatcactcaatccatatgttattttctaaaattcctccgtt |
28560094 |
T |
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