View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4511_low_9 (Length: 410)
Name: NF4511_low_9
Description: NF4511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4511_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 26 - 405
Target Start/End: Original strand, 47125653 - 47126030
Alignment:
| Q |
26 |
cgtgtaacaagagcatgcttcatactcaatgttgtccttatggggaccaggaaaatgtgtcccaccatctctcattctttacctgttttgctcctaacta |
125 |
Q |
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| T |
47125653 |
cgtgtaacaagagcatgcttcatactcaatgttgtccttatggggaccaggaaaatgtgtcccaccatctctcattctttacctgttttgctcctaacta |
47125752 |
T |
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| Q |
126 |
tggagcacattttatcataacaatttataaaattggacttgtataagtttaaaaaagtaatgtaactattattcgaatatatatataacttgagtgtaac |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||| |||||||||||| |
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| T |
47125753 |
tggagcacattttatcataacaatttataaaattggacttgtataagtttaaaaaaataatgtaactattattggtatatatatat--cttgagtgtaac |
47125850 |
T |
|
| Q |
226 |
tcaagttctgaatctgatttccattgaaataaagtttcaattgtccaagtttagagggaatgaggattcaatgtctaatttgcaagaaatggatgacctt |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47125851 |
tcaagttctgaatctgatttccattgaaataaagtttcaattgtccgagtttagagggaatgaggattcaatgtctaatttgcaagaaatggatgacctt |
47125950 |
T |
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| Q |
326 |
ttatcaccttttccttttttcttgtattacctttgcatattctaaggattttctagtgttgtgtcatttcatcctttgct |
405 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47125951 |
ttatcatcttttccttttttcttgtattacctttgcatattctaaggattttctagtgttgtgtcatttcatcctttgct |
47126030 |
T |
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