View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512-Insertion-1 (Length: 922)
Name: NF4512-Insertion-1
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 8 - 491
Target Start/End: Original strand, 44101528 - 44102011
Alignment:
| Q |
8 |
tgtgtccatcaagttagtctctgaataatgacaggatcaggaacttaatttaatcatttatgaattaatatgactgatgcattttattttctcatagact |
107 |
Q |
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| T |
44101528 |
tgtgtccatcaagttagtctctgaataatgacaggatcaggaacttaatttaatcatttatgaattaatatgactgatgcattttattttctcatagact |
44101627 |
T |
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| Q |
108 |
aatttgattcgattgtttacatgatttgatttgagttctttattttaagattgtgagtaatgttgtggttgtaaatgctaggccaacaagtggtggttcc |
207 |
Q |
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| T |
44101628 |
aatttgattcgattgtttacatgatttgatttgagttctttattttaagattgcgagtaatgttgtggttgtaaatgctaggccaacaagtggtggttcc |
44101727 |
T |
|
| Q |
208 |
atgaatccggtgcgcaccttaggtccagccgttgcagcaggaaattacaagcatctctggatatatttggtggcaccaacgcttggtgctctagctggtt |
307 |
Q |
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| T |
44101728 |
atgaatccagtgcgcaccttaggtccagccgttgcagcaggaaattacaagcatctctggatatatttggtggcgccaacgcttggtgctctagctggtt |
44101827 |
T |
|
| Q |
308 |
ctggagtttatacgcttatcaagctacgtgacaacggagctgaaccacctcaaccagttaggagcttccgtcgctagaactggctgcaatcctgctctcg |
407 |
Q |
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| T |
44101828 |
ctggagtttatacgcttatcaagctacgtgacaacggagctgaaccacctcaaccagttaggagcttccgtcgctagaactggctgcaaccctgctctcg |
44101927 |
T |
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| Q |
408 |
acacccccacttctcatatttcaagatctttgtgtgatagtatagagcctaattaaataaaatgtggggactcgttgtaatcga |
491 |
Q |
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| T |
44101928 |
acacccccacttctcatatttcaagatctttgtgtgatagtatagagcctaattaaataaaatgtggggactcgttgtaatcga |
44102011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 541 - 922
Target Start/End: Original strand, 44102059 - 44102439
Alignment:
| Q |
541 |
cattaaagctttgtttggttgatgtggattttctaagggctgattatagccatggtttgtattatgattggtgcaacttaaacttataatttaataatgt |
640 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44102059 |
cattaaagctttgtttggttgatgtggattttctaagggctgattatagccatggtttgtattatgattggtgcaacttaaacttataatttaataatgt |
44102158 |
T |
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| Q |
641 |
gttctgttgtgtcgaacattcttcttcttttacctttagtttagctcaagactattgaaggaaaataaatgtctcaaaatatacaagtcaagtgaaacca |
740 |
Q |
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| T |
44102159 |
gttctgttgtgtggaacattcttcttcttttacctttagtttagctcaagactattgaaggaaaataaatgtctcaaaatatacaagtcaagtgaaacca |
44102258 |
T |
|
| Q |
741 |
tacatagaaaaggtaaattcaacacctaatttatcattcataagacttgaatccaagacttcattacaaagaaaacataaacacacattctcattatcaa |
840 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||| |
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| T |
44102259 |
tacatataaaaggtaaattcaacacctaatttatcattcataagacttgaatccaagacttcatcacaaagaaaacaaacacacacattctcattatcaa |
44102358 |
T |
|
| Q |
841 |
caatcccaaaagtggaagggttgatgaacaaattgaagttaaaattgtcaaaagctcattgcacattgttagtaacaatatg |
922 |
Q |
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| T |
44102359 |
caatcccaaaagtggaa-ggttgatgagcaaattgaagttaaaattgtcaaaagctcattgcacattgttagtgacaatatg |
44102439 |
T |
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