View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512-Insertion-3 (Length: 799)
Name: NF4512-Insertion-3
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512-Insertion-3 |
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Alignment Details
Target: chr7 (Bit Score: 526; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 193 - 760
Target Start/End: Complemental strand, 32565095 - 32564527
Alignment:
| Q |
193 |
gtaacattataaactagaaccaaaaaa-tgctgcttagtatagccactatagccgcacatgaagaaaaggtaattccacgagcatagattcttgttcaat |
291 |
Q |
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| T |
32565095 |
gtaacattataaactagaaccaaaaaaatgctgcttagtatagccactatagccgcacatgaagaaaaggtaattccacgagcatagattcttgttcaag |
32564996 |
T |
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| Q |
292 |
ggtgtgtgttttctagaaaacgacactatgaacactcttcctcataaattctataacatgaaaaccactaaaggacataaagtatatgaatcggattgga |
391 |
Q |
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| T |
32564995 |
ggtgtgtgttttctagaaaacgacactatgaacactcttcctcataaattctataacatgaaaaccactaaaggacataaagtatatgaatcggattgga |
32564896 |
T |
|
| Q |
392 |
ttgtcgttttgcttgataactaaagaataattaaacttcctagacttggaaaatttggtccatgcatgnnnnnnnnnggtttatagtagtcgctattctt |
491 |
Q |
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| T |
32564895 |
ttgtcgttttgcttgataactaaagaataattaaacttcctagacttggaaaatttggtccatgcatgtttttttttggtttatagtagtcgctattctt |
32564796 |
T |
|
| Q |
492 |
cacctttgtttacattttccaatgagtaattgagtagtatgacaaattttccatggatttgtgttcattatagtaatattatgatgcaatcactaatgta |
591 |
Q |
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| T |
32564795 |
cacctttgtttacattttccaatgagtaattgagtagtatgacaaattttccatggatttgtgttcattatagtaatattatgatgcaatcactaatgta |
32564696 |
T |
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| Q |
592 |
gttatgtgattagagttatcgtggagagatcatatgatctcttattgaacctttgtatcttcatcaaacggcactagccgtatgactaccgtgactgcat |
691 |
Q |
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| T |
32564695 |
gttatgtgattagagttatcgtggagagatcatatgatctcttattgaacctttgtatcttcatcaaacggccctagccgtatgactaccgtgactgcat |
32564596 |
T |
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| Q |
692 |
cgcaatatgagtacactaactttgaatccaagaaagatgcatgatggtaacaagtgcaaatttcttttt |
760 |
Q |
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| T |
32564595 |
cgcaatatgagtacactaactttgaatccaagaaagatgcatgatggtaacaagtgcaaatttcttttt |
32564527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 32565279 - 32565162
Alignment:
| Q |
8 |
atttcaatagtaaactcctggactaatgtgattagtgcaatagctaggtccctatccctcgagatcatccaaattaactgttcaattgaacatttctatt |
107 |
Q |
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| T |
32565279 |
atttctatagtaaactcctggactaatgtgattagtgcaatagctaggtccctatccctcgagatgatc-atccaaactgttcagttgaacatttctatt |
32565181 |
T |
|
| Q |
108 |
ttccttatgctttttactg |
126 |
Q |
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| T |
32565180 |
ttccttatgctttttactg |
32565162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 752 - 799
Target Start/End: Complemental strand, 32564343 - 32564296
Alignment:
| Q |
752 |
tttcttttttatataagaaaagtttaatggctattcaacgtgaagata |
799 |
Q |
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| T |
32564343 |
tttcttttttatataagaaaagtttaatggctatacaacgtgaagata |
32564296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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