View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4512-Insertion-4 (Length: 561)

Name: NF4512-Insertion-4
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4512-Insertion-4
NF4512-Insertion-4
[»] chr6 (11 HSPs)
chr6 (284-561)||(16579277-16579556)
chr6 (284-561)||(16615824-16616103)
chr6 (39-288)||(16872908-16873165)
chr6 (40-288)||(16579589-16579842)
chr6 (40-288)||(16615538-16615791)
chr6 (284-500)||(16872657-16872875)
chr6 (284-561)||(16570697-16570957)
chr6 (103-288)||(16571014-16571204)
chr6 (306-553)||(17040300-17040549)
chr6 (8-36)||(16579914-16579942)
chr6 (8-36)||(16615438-16615466)
[»] chr2 (4 HSPs)
chr2 (284-554)||(32790754-32791025)
chr2 (40-265)||(32791087-32791312)
chr2 (39-264)||(236323-236548)
chr2 (284-427)||(236608-236749)
[»] chr7 (2 HSPs)
chr7 (39-264)||(48300749-48300974)
chr7 (284-427)||(48301034-48301175)
[»] chr1 (2 HSPs)
chr1 (39-264)||(7389257-7389482)
chr1 (284-427)||(7389056-7389197)
[»] scaffold0256 (4 HSPs)
scaffold0256 (106-286)||(12505-12692)
scaffold0256 (167-268)||(14937-15038)
scaffold0256 (39-77)||(14842-14880)
scaffold0256 (528-561)||(12738-12771)


Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 284 - 561
Target Start/End: Complemental strand, 16579556 - 16579277
Alignment:
Q  284 gaatttgcagctcttgtgcaggtgtttt-agccaattttgataggtaggtaagatgtgatcaacttgttcaaaccttccagttttcttccttcccctaac 382  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16579556 gaatttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttttcttccttcccctaac 16579457  T
Q  383 ttccacaagccatttgaacttctttttaa-cagtttcccatgtgattgatggatcagcatcgataatatcatcaatgctgtcatattctttgttagagtt 481  Q
    | |||||||||||||||||||||| |||| || ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| || |||||     
T  16579456 tgccacaagccatttgaacttcttgttaaacaatttcccatgtgatcgatggatgagcatcgataatatcatcaatgctgtcatattcttcgtcagagtc 16579357  T
Q  482 ctcgccgtaactctcaggatccctgcacttgttgatcaagtcctcgtactgcttattattattcttcaatttcggcatca 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  16579356 ctcgccgtaactctcaggatccctgcacttgttgatcaagtcctcatactgcttattattattcttcaatttcggaatca 16579277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 284 - 561
Target Start/End: Original strand, 16615824 - 16616103
Alignment:
Q  284 gaatttgcagctcttgtgcaggtgtttt-agccaattttgataggtaggtaagatgtgatcaacttgttcaaaccttccagttttcttccttcccctaac 382  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  16615824 gaatttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttttcttccttcccctaac 16615923  T
Q  383 ttccacaagccatttgaacttctttttaa-cagtttcccatgtgattgatggatcagcatcgataatatcatcaatgctgtcatattctttgttagagtt 481  Q
    | |||||||||||||||||||||| |||| || ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| || |||||     
T  16615924 tgccacaagccatttgaacttcttgttaaacaatttcccatgtgatcgatggatgagcatcgataatatcatcaatgctgtcatattcttcgtcagagtc 16616023  T
Q  482 ctcgccgtaactctcaggatccctgcacttgttgatcaagtcctcgtactgcttattattattcttcaatttcggcatca 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  16616024 ctcgccgtaactctcaggatccctgcacttgttgatcaagtcctcatactgcttattattattcttcaatttcggaatca 16616103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 39 - 288
Target Start/End: Complemental strand, 16873165 - 16872908
Alignment:
Q  39 gtgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaannnnnnnn--aagatagtaactaagtttccccaaacacgaatcgatccgtta 136  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||           |||| || ||||||||||||||||||||||||||||||||||    
T  16873165 gtgtgtgaggatctatgcattgcaggctcttgaaaaactcagcctcatttttttttttaagaaagaaactaagtttccccaaacacgaatcgatccgtta 16873066  T
Q  137 tagtcggccccttacttagtttcattctcatctggctcctctgaatcatcaacatttaagtttggatactgcacaagaatatcgagaatgaccaacatat 236  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  16873065 tagtcggcccctttcttagtttcattctcatctggctcctctgaatcatcaacatttatgtttggatattgcacaagaatatcgagaatgaccaacatat 16872966  T
Q  237 tctgcacacattttttccacacattt------atatgcccaccaatgaggcttgaatt 288  Q
    ||||||||||||||||||||||||||      ||||||||||||||||||||||||||    
T  16872965 tctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaatt 16872908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 40 - 288
Target Start/End: Complemental strand, 16579842 - 16579589
Alignment:
Q  40 tgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaannnnnnnnaagatagtaactaagtttccccaaacacgaatcgatccgttatag 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        |||| || ||||||||||||||||||||||||| || ||||||||    
T  16579842 tgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaattttttt-aagaaagcaactaagtttccccaaacacgaatcaatacgttatag 16579744  T
Q  140 tcggccccttacttagtttcattctcatctggctcctctgaatcatcaacatttaagtttggatactgcacaagaatatcgagaatgaccaacatattct 239  Q
    |||||||||| |||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  16579743 tcggcccctttcttagtttcactctcatatggctcctctgaatcatcaacatttatgtttggatactgcacaagaatatcgagaatgaccaacatattat 16579644  T
Q  240 gcacacattttttccacacattt------atatgcccaccaatgaggcttgaatt 288  Q
    |||||||||||||||||||||||      ||||||||||||||||||||||||||    
T  16579643 gcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaatt 16579589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 40 - 288
Target Start/End: Original strand, 16615538 - 16615791
Alignment:
Q  40 tgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaannnnnnnnaagatagtaactaagtttccccaaacacgaatcgatccgttatag 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        |||| || ||||||||||||||||||||||||| || ||||||||    
T  16615538 tgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaattttttt-aagaaagcaactaagtttccccaaacacgaatcaatacgttatag 16615636  T
Q  140 tcggccccttacttagtttcattctcatctggctcctctgaatcatcaacatttaagtttggatactgcacaagaatatcgagaatgaccaacatattct 239  Q
    |||||||||| |||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  16615637 tcggcccctttcttagtttcactctcatatggctcctctgaatcatcaacatttatgtttggatactgcacaagaatatcgagaatgaccaacatattat 16615736  T
Q  240 gcacacattttttccacacattt------atatgcccaccaatgaggcttgaatt 288  Q
    |||||||||||||||||||||||      ||||||||||||||||||||||||||    
T  16615737 gcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaatt 16615791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 284 - 500
Target Start/End: Complemental strand, 16872875 - 16872657
Alignment:
Q  284 gaatttgcagctcttgtgcaggtgtttt-agccaattttgataggtaggtaagatgtgatcaacttgttcaaaccttccagttttcttccttcccctaac 382  Q
    ||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  16872875 gaatttgaagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcaattttcttccttcccctaac 16872776  T
Q  383 ttccacaagccatttgaacttctt-tttaacagtttcccatgtgattgatggatcagcatcgataatatcatcaatgctgtcatattctttgttagagtt 481  Q
    | |||||||||||||||||||||| || |||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  16872775 tgccacaagccatttgaacttcttgttaaacaatttcccatgtgatcgatggatcagcatcgataatatcttcaatgctgtcatattctttgttagagtc 16872676  T
Q  482 ctcgccgtaactctcagga 500  Q
    ||||||||||||| |||||    
T  16872675 ctcgccgtaactcccagga 16872657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 284 - 561
Target Start/End: Complemental strand, 16570957 - 16570697
Alignment:
Q  284 gaatttgcagctcttgtgcaggtgttttagccaattttgataggtaggtaagatgtgatcaacttgttcaaaccttccagttttcttccttcccctaact 383  Q
    |||||||||||| || ||||||| || ||||||||||||||||||||||||    || |||||||||||||||||||||||||| ||||||| |||| |     
T  16570957 gaatttgcagcttttatgcaggtattatagccaattttgataggtaggtaac---tgttcaacttgttcaaaccttccagttttattccttctcctagcc 16570861  T
Q  384 tccacaagccatttgaacttctttttaacagtttcccatgtgattgatggatcagcatcgataatatcatcaatgctgtcatattctttgttagagttct 483  Q
     |||||||   |||||||||||| |||| ||| ||||||||||| |||||||||||||||||||| | ||||  ||| | ||||||||||| ||||| ||    
T  16570860 gccacaagatctttgaacttcttgttaaaagtgtcccatgtgatggatggatcagcatcgataatcttatcatggctctaatattctttgtcagagtcct 16570761  T
Q  484 cgccgtaactctcaggatccctgcacttgttgatcaagtcctcgtactgcttattattattcttcaatttcggcatca 561  Q
    ||||||||||               |||||| ||||||||||| |||||||||||||||||||||||||| |||||||    
T  16570760 cgccgtaact--------------tcttgttaatcaagtcctcatactgcttattattattcttcaatttgggcatca 16570697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 103 - 288
Target Start/End: Complemental strand, 16571204 - 16571014
Alignment:
Q  103 aactaagtttccccaaacacgaatcgatccgttatagtcggcccctta-cttagtttcattctcatctggctcctctgaatcatcaacatttaagtttgg 201  Q
    ||||||| ||| |||||||||||| | |||||||||||||| |||||| |||||||| |||||||||||||||  ||||||||||| | |||| ||||||    
T  16571204 aactaagcttcgccaaacacgaattggtccgttatagtcggacccttaacttagtttaattctcatctggctcaactgaatcatcagcctttatgtttgg 16571105  T
Q  202 atactgcacaagaatatcgagaatgaccaacatattctgcacacattttttccacacattt----atatgcccaccaatgaggcttgaatt 288  Q
     | |||| | |||||||||||||||||||| |||||||||||||||||||||||||||| |    | ||||||||||| ||||||||||||    
T  16571104 ttgctgcgctagaatatcgagaatgaccaaaatattctgcacacattttttccacacatataagcacatgcccaccaacgaggcttgaatt 16571014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 306 - 553
Target Start/End: Original strand, 17040300 - 17040549
Alignment:
Q  306 tgttttagccaattttgataggtaggtaagatgtgatcaacttgttcaaaccttccagttttcttccttcccctaacttccacaagccatttgaacttct 405  Q
    ||||||||||||||| | |||||||||||| |||  |||||||| |||| |||||||| |||||||||||||||| |  ||||||||  |||||||||||    
T  17040300 tgttttagccaatttagctaggtaggtaagctgt--tcaacttgctcaagccttccagatttcttccttcccctagccgccacaagctgtttgaacttct 17040397  T
Q  406 ttttaacagtttcccatgtgattgatggatcagcatcgataatatcatc-aatgctgtcatattctttgttagagttctcgccgtaactctcagga---t 501  Q
    | |||||||| | ||||||||| || |||||||||||||||||   |||  | ||| |||||||||| || | ||| |   |||||||||||||||   |    
T  17040398 tgttaacagtgtgccatgtgatcgacggatcagcatcgataatcgaatcgtaagctctcatattcttcgtcaaagtccctaccgtaactctcaggattct 17040497  T
Q  502 ccctgcacttgttgatcaagtcctcgtactgcttattattattcttcaattt 553  Q
     |||||||||||| ||||| ||||| |||||| ||||||| |||||||||||    
T  17040498 gcctgcacttgttaatcaaatcctcatactgcatattattcttcttcaattt 17040549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 16579942 - 16579914
Alignment:
Q  8 gtttgtagtaaatgagttcaaccctcatc 36  Q
    |||||||||||||||||||||||||||||    
T  16579942 gtttgtagtaaatgagttcaaccctcatc 16579914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 16615438 - 16615466
Alignment:
Q  8 gtttgtagtaaatgagttcaaccctcatc 36  Q
    |||||||||||||||||||||||||||||    
T  16615438 gtttgtagtaaatgagttcaaccctcatc 16615466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 1e-73; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 284 - 554
Target Start/End: Complemental strand, 32791025 - 32790754
Alignment:
Q  284 gaatttgcagctcttgtgcaggtgttttagccaattttgataggtaggtaagatgtgatcaacttgttcaaaccttccagttttcttccttcccctaact 383  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||| |||  |||||||||||||||||||||||||| |||||||||||| ||    
T  32791025 gaatttgcagcttttgtgcaggtgttttagccaattttgttaggtaggtaagctgt--tcaacttgttcaaaccttccagttttattccttcccctagct 32790928  T
Q  384 tccacaagccatttgaacttctttttaacagtttcccatgtgattgatggatcagcatcgataatatcatcaatgctgtcatattctttgttagagttct 483  Q
     ||||||||  |||||||||||| || ||||| ||||||||||| |||||||||||||| |||||||| |||  ||| |||||||||| || ||||| ||    
T  32790927 gccacaagctctttgaacttcttgttcacagtatcccatgtgatcgatggatcagcatcaataatatcgtcatggctctcatattcttcgtcagagtgct 32790828  T
Q  484 cgccgtaactctcagga---tccctgcacttgttgatcaagtcctcgtactgcttattattattcttcaatttc 554  Q
    | |||||||||||||||   |||||||||||| | |||||  |||| |||||||||||||| ||||||||||||    
T  32790827 caccgtaactctcaggattttccctgcacttggtaatcaaaccctcatactgcttattattcttcttcaatttc 32790754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 40 - 265
Target Start/End: Complemental strand, 32791312 - 32791087
Alignment:
Q  40 tgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaannnnnnnnaagatagtaactaagtttccccaaacacgaatcgatccgttatag 139  Q
    ||||||||||||||| ||||||| ||||||||| ||||||||||  |        | || || ||||||||||||| |||||||||||| ||||||||||    
T  32791312 tgtgtgaggatctattcattgcatgctcttgaaaaactcagcatatattttttctatgaaagcaactaagtttcccgaaacacgaatcggtccgttatag 32791213  T
Q  140 tcggccccttacttagtttcattctcatctggctcctctgaatcatcaacatttaagtttggatactgcacaagaatatcgagaatgaccaacatattct 239  Q
    | |||||||| |||| |||||||||| ||| ||||  ||||||||||||| |||| |||||| | |||||| |||||||| |||||||||||||||||||    
T  32791212 ttggcccctttcttaatttcattctcttcttgctcaactgaatcatcaacctttatgtttgggtgctgcaccagaatatcaagaatgaccaacatattct 32791113  T
Q  240 gcacacattttttccacacatttata 265  Q
    ||||||||||||||||||||||||||    
T  32791112 gcacacattttttccacacatttata 32791087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 39 - 264
Target Start/End: Original strand, 236323 - 236548
Alignment:
Q  39 gtgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaannnnnnnnaagatagtaactaagtttccccaaacacgaatcgatccgttata 138  Q
    ||||||| ||||| ||||| |||| ||||||||| ||||| ||||| |        |||| || ||||||||| ||||| ||| |||| | ||||| |||    
T  236323 gtgtgtggggatcaatgcactgcaagctcttgaaaaactcggcatctattttttctaagaaagcaactaagttaccccagacatgaatgggtccgtcata 236422  T
Q  139 gtcggccccttacttagtttcattctcatctggctcctctgaatcatcaacatttaagtttggatactgcacaagaatatcgagaatgaccaacatattc 238  Q
    |||  |||||| ||||||||||||||| ||| ||||| | ||||||||||| |||| |||||| | |||||| ||||| ||||| ||||||| ||| |||    
T  236423 gtcatcccctttcttagtttcattctcgtctagctccacagaatcatcaacctttatgtttgggtgctgcacgagaatgtcgaggatgaccagcatgttc 236522  T
Q  239 tgcacacattttttccacacatttat 264  Q
    |||||||| |||||||||||||||||    
T  236523 tgcacacactttttccacacatttat 236548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 427
Target Start/End: Original strand, 236608 - 236749
Alignment:
Q  284 gaatttgcagctcttgtgcaggtgttttagccaattttgataggtaggtaagatgtgatcaacttgttcaaaccttccagttttcttccttcccctaact 383  Q
    ||||||||||||  || |||||||||||||| | ||||| |||| | ||||| ||   ||||| ||||||||||||||||||  |||||| |||||  ||    
T  236608 gaatttgcagcttctgagcaggtgttttagcaacttttgttaggaaagtaagctgc--tcaacctgttcaaaccttccagttcccttcctgcccctggct 236705  T
Q  384 tccacaagccatttgaacttctttttaacagtttcccatgtgat 427  Q
    |||| || |  |||||||||||| |||||||| |||||||||||    
T  236706 tccagaatctctttgaacttcttgttaacagtgtcccatgtgat 236749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 39 - 264
Target Start/End: Original strand, 48300749 - 48300974
Alignment:
Q  39 gtgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaannnnnnnnaagatagtaactaagtttccccaaacacgaatcgatccgttata 138  Q
    ||||||| ||||||||||| |||| ||||||||| || || ||||| |        |||| || ||||||||| ||||| ||| |||| | ||||| |||    
T  48300749 gtgtgtggggatctatgcactgcaagctcttgaaaaattcggcatctattttttctaagaaagcaactaagttgccccagacatgaatgggtccgtcata 48300848  T
Q  139 gtcggccccttacttagtttcattctcatctggctcctctgaatcatcaacatttaagtttggatactgcacaagaatatcgagaatgaccaacatattc 238  Q
    |||  |||||| ||||| ||||||||||||| | ||| | ||||||||||| |||| |||||| | |||||| |||||||| |||||||||| |||||||    
T  48300849 gtcatcccctttcttagattcattctcatctagttccacagaatcatcaacctttatgtttgggtgctgcacgagaatatcaagaatgaccagcatattc 48300948  T
Q  239 tgcacacattttttccacacatttat 264  Q
    ||||| || |||||||||||||||||    
T  48300949 tgcacgcactttttccacacatttat 48300974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 427
Target Start/End: Original strand, 48301034 - 48301175
Alignment:
Q  284 gaatttgcagctcttgtgcaggtgttttagccaattttgataggtaggtaagatgtgatcaacttgttcaaaccttccagttttcttccttcccctaact 383  Q
    ||||||||||||  ||||||||||||||||| | ||||| |||| ||||||  ||   ||||| ||||||||||||||||||  |||||| |||||  ||    
T  48301034 gaatttgcagcttctgtgcaggtgttttagcaacttttgttaggaaggtaaactgc--tcaacctgttcaaaccttccagttcccttcctgcccctggct 48301131  T
Q  384 tccacaagccatttgaacttctttttaacagtttcccatgtgat 427  Q
    |||| || |  ||||||||| || |||||||| |||||||||||    
T  48301132 tccagaatctctttgaacttgttgttaacagtatcccatgtgat 48301175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 39 - 264
Target Start/End: Complemental strand, 7389482 - 7389257
Alignment:
Q  39 gtgtgtgaggatctatgcattgcaggctcttgaagaactcagcatcaannnnnnnnaagatagtaactaagtttccccaaacacgaatcgatccgttata 138  Q
    ||||||| ||||| ||||| |||| ||||||||| ||||| ||||| |        |||| || ||||||||| ||||| |||  ||| | |||||||||    
T  7389482 gtgtgtggggatcaatgcactgcaagctcttgaaaaactcggcatctattttttctaagaaagcaactaagttgccccagacattaatgggtccgttata 7389383  T
Q  139 gtcggccccttacttagtttcattctcatctggctcctctgaatcatcaacatttaagtttggatactgcacaagaatatcgagaatgaccaacatattc 238  Q
    |||  |||||| ||||||||||||||| ||| ||||| | ||||||||||| |||| |||||| | |||||| ||||| ||||||||||||| ||| |||    
T  7389382 gtcatcccctttcttagtttcattctcgtctagctccacagaatcatcaacctttatgtttgggtgctgcacgagaatgtcgagaatgaccagcatgttc 7389283  T
Q  239 tgcacacattttttccacacatttat 264  Q
    |||||||| |||||||||||| ||||    
T  7389282 tgcacacactttttccacacacttat 7389257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 427
Target Start/End: Complemental strand, 7389197 - 7389056
Alignment:
Q  284 gaatttgcagctcttgtgcaggtgttttagccaattttgataggtaggtaagatgtgatcaacttgttcaaaccttccagttttcttccttcccctaact 383  Q
    ||||||||||||  || |||||||||||||| | ||||| |||| ||||||| ||   ||||| ||||||||||||||||||  |||||| |||||  ||    
T  7389197 gaatttgcagcttctgagcaggtgttttagcaacttttgttaggaaggtaagctgc--tcaacctgttcaaaccttccagttcccttcctgcccctggct 7389100  T
Q  384 tccacaagccatttgaacttctttttaacagtttcccatgtgat 427  Q
    |||| || |  |||||||||||| ||||| || |||||||||||    
T  7389099 tccagaatctctttgaacttcttgttaaccgtgtcccatgtgat 7389056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 106 - 286
Target Start/End: Original strand, 12505 - 12692
Alignment:
Q  106 taagtttccccaaacacgaatcgatccgttat-agtcggccccttacttagtttcattctcatctggctcctctgaatcatcaacatttaagtttggata 204  Q
    |||| |||||||||||||||| | | |||||| |||||| ||||| |||||||| ||||||||| |||||  ||||||||| | | |||| |||||| |     
T  12505 taagcttccccaaacacgaattggtacgttattagtcggaccctttcttagtttaattctcatcaggctcaactgaatcataagcctttatgtttggttg 12604  T
Q  205 ctgcacaagaatatcgagaatgaccaacatattctgcacacattttttccacacattt------atatgcccaccaatgaggcttgaa 286  Q
    |||| | |||||||| ||||| ||||| ||||||||| ||||||||||||||||||||      ||||||||||||||||||||||||    
T  12605 ctgcgctagaatatctagaattaccaaaatattctgctcacattttttccacacatttataagcatatgcccaccaatgaggcttgaa 12692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 14937 - 15038
Alignment:
Q  167 tctggctcctctgaatcatcaacatttaagtttggatactgcacaagaatatcgagaatgaccaacatattctgcacacattttttccacacatttatat 266  Q
    |||||||||| ||||||||||||| ||| |||||||| ||||  |||||||| ||||||||| | || |||||||||| |||||||||||| ||||||||    
T  14937 tctggctcctgtgaatcatcaacagttatgtttggatgctgccgaagaatattgagaatgacaatcaaattctgcacaaattttttccacatatttatat 15036  T
Q  267 gc 268  Q
    ||    
T  15037 gc 15038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 77
Target Start/End: Original strand, 14842 - 14880
Alignment:
Q  39 gtgtgtgaggatctatgcattgcaggctcttgaagaact 77  Q
    |||||||||||||||||| ||||||||||||||| ||||    
T  14842 gtgtgtgaggatctatgcgttgcaggctcttgaaaaact 14880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 528 - 561
Target Start/End: Original strand, 12738 - 12771
Alignment:
Q  528 tactgcttattattattcttcaatttcggcatca 561  Q
    ||||||||||||||||||||||||||| ||||||    
T  12738 tactgcttattattattcttcaatttctgcatca 12771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University