View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4512-Insertion-6 (Length: 173)

Name: NF4512-Insertion-6
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4512-Insertion-6
NF4512-Insertion-6
[»] chr8 (8 HSPs)
chr8 (7-173)||(28563005-28563171)
chr8 (7-162)||(28541211-28541383)
chr8 (98-162)||(28568516-28568580)
chr8 (98-162)||(28576109-28576173)
chr8 (100-173)||(28557814-28557888)
chr8 (21-61)||(28557939-28557979)
chr8 (9-78)||(28568621-28568689)
chr8 (9-78)||(28576214-28576282)


Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 7 - 173
Target Start/End: Complemental strand, 28563171 - 28563005
Alignment:
Q  7 agtttccacttaatttccaaaaatagaaacactatcttgccgacgattttgactcacataaactttgttagagagatgagagaaattggtgcaagatgcc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28563171 agtttccacttaatttccaaaaatagaaacactatcttgccgacgattttgactcacataaactttgttagagagatgagagaaattggtgcaagatgcc 28563072  T
Q  107 aaatttctcttgtttgattgtgaagaagttggcgagagaggctgctttaatatgggacctattgtca 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28563071 aaatttctcttgtttgattgtgaagaagttggcgagagaggctgctttaatatgggacctattgtca 28563005  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 7e-26
Query Start/End: Original strand, 7 - 162
Target Start/End: Complemental strand, 28541383 - 28541211
Alignment:
Q  7 agtttccacttaatttccaaaaatagaaacactatcttgccgacgattttgactcacataaactttgtt---------------agagagatgagagaa- 90  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||| |||||               |||||||||||||||     
T  28541383 agtttccacttaatttccaaaaatagaaacacaatcttgccgatgattttgactcatataaaccttgttagacttttcagtgaaagagagatgagagaat 28541284  T
Q  91 -attggtgcaagatgccaaatttctcttgtttgattgtgaagaagttggcgagagaggctgctttaatatggg 162  Q
     |||||    |||||||||||||||||||||||||||||||| ||||||| | ||| |||||||||| |||||    
T  28541283 tattggcaagagatgccaaatttctcttgtttgattgtgaaggagttggcaaaagatgctgctttaacatggg 28541211  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 28568580 - 28568516
Alignment:
Q  98 caagatgccaaatttctcttgtttgattgtgaagaagttggcgagagaggctgctttaatatggg 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  28568580 caagatgccaaatttctcttgtttgattgtgaagaagttggcgagagaggttgctttaacatggg 28568516  T

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Target: chr8; HSP #4
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 28576173 - 28576109
Alignment:
Q  98 caagatgccaaatttctcttgtttgattgtgaagaagttggcgagagaggctgctttaatatggg 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  28576173 caagatgccaaatttctcttgtttgattgtgaagaagttggcgagagaggttgctttaacatggg 28576109  T

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Target: chr8; HSP #5
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 100 - 173
Target Start/End: Complemental strand, 28557888 - 28557814
Alignment:
Q  100 agatgccaaatttctcttgtttgattgtgaagaagttggcgagagaggctgcttt-aatatgggacctattgtca 173  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||| |||||||| || ||||||||||| ||||    
T  28557888 agatgccaaatttctcttgtttgattgtgaaggagttggcaagagatgctgctttaaacatgggacctatcgtca 28557814  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 28557979 - 28557939
Alignment:
Q  21 ttccaaaaatagaaacactatcttgccgacgattttgactc 61  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28557979 ttccaaaaatagaaacactatcttgccgacgattttgactc 28557939  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 28568689 - 28568621
Alignment:
Q  9 tttccacttaatttccaaaaatagaaacactatcttgccgacgattttgactcacataaactttgttaga 78  Q
    ||||||||||| |||| || | ||||| ||||||||| ||||||||||||| ||||||||| ||||||||    
T  28568689 tttccacttaacttcccaaca-agaaaaactatcttgtcgacgattttgacccacataaaccttgttaga 28568621  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 28576282 - 28576214
Alignment:
Q  9 tttccacttaatttccaaaaatagaaacactatcttgccgacgattttgactcacataaactttgttaga 78  Q
    ||||||||||| |||| || | ||||| ||||||||| ||||||||||||| ||||||||| ||||||||    
T  28576282 tttccacttaacttcccaaca-agaaaaactatcttgtcgacgattttgacccacataaaccttgttaga 28576214  T

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