View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512-Insertion-8 (Length: 102)
Name: NF4512-Insertion-8
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512-Insertion-8 |
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| [»] scaffold0204 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: scaffold0204 (Bit Score: 95; Significance: 5e-47; HSPs: 2)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 95; E-Value: 5e-47
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 20357 - 20451
Alignment:
| Q |
8 |
atatttccgttagaaatccgatcggcagggcaaagtataacagttgctgtgaaccttctcttcactttcataattgcacaggcctttctttccct |
102 |
Q |
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| T |
20357 |
atatttccgttagaaatccgatcggcagggcaaagtataacagttgctgtgaaccttctcttcactttcataattgcacaggcctttctttccct |
20451 |
T |
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Target: scaffold0204; HSP #2
Raw Score: 57; E-Value: 2e-24
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 8207 - 8287
Alignment:
| Q |
8 |
atatttccgttagaaatccgatcggcagggcaaagtataacagttgctgtgaaccttctcttcactttcataattgcacag |
88 |
Q |
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| T |
8207 |
atatttccattagaaatccgatcagcagggcagagtataacagttgctgtaaaccttcttttcactttcataatcgcacag |
8287 |
T |
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Target: chr4 (Bit Score: 95; Significance: 5e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 5e-47
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 48332835 - 48332929
Alignment:
| Q |
8 |
atatttccgttagaaatccgatcggcagggcaaagtataacagttgctgtgaaccttctcttcactttcataattgcacaggcctttctttccct |
102 |
Q |
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| T |
48332835 |
atatttccgttagaaatccgatcggcagggcaaagtataacagttgctgtgaaccttctcttcactttcataattgcacaggcctttctttccct |
48332929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 4e-23
Query Start/End: Original strand, 8 - 90
Target Start/End: Original strand, 48345430 - 48345512
Alignment:
| Q |
8 |
atatttccgttagaaatccgatcggcagggcaaagtataacagttgctgtgaaccttctcttcactttcataattgcacaggc |
90 |
Q |
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| T |
48345430 |
atatttccattagaaatccgatcggcagggcaaagtatcacagttgcagtaaaccttctgttcactttcattatcgcacaggc |
48345512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 41414056 - 41413980
Alignment:
| Q |
8 |
atatttccgttagaaatccgatcggcagggcaaagtataacagttgctgtgaaccttctcttcactttcataattgc |
84 |
Q |
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| T |
41414056 |
atatttccattagaaatccgttcagcagggcaaagtatcacagtatttgtaaacctttttttcactttcataattgc |
41413980 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 36293583 - 36293501
Alignment:
| Q |
8 |
atatttccgttagaaatccgatcggcagggcaaagtataacagttgctgtgaaccttctcttcactttcataattgcacaggc |
90 |
Q |
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|||||||| ||||||||||| || |||||||| ||||| ||||| |||| |||||| | ||||||||| ||||||| ||||| |
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| T |
36293583 |
atatttccattagaaatccgttcagcagggcagagtatcacagtatctgtaaacctttttttcactttcgtaattgctcaggc |
36293501 |
T |
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