View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512_high_1 (Length: 607)
Name: NF4512_high_1
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 29604920 - 29604681
Alignment:
| Q |
1 |
ttcagtcatgccttgatctgtgcttctgctgtctacattttcaactctgcattaatctcaatcaataacattgtctacaattcaaatctatttttgtaac |
100 |
Q |
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| T |
29604920 |
ttcagtcatgccttgatctgtgcttctgctgtctacattttcaactctgcattaatctcaatcaataacattgtctataattcaaatctgtttttgtaac |
29604821 |
T |
|
| Q |
101 |
tcctccagctagcatataagatcaatatcaatattgtcattaatcttattaaatgagattattgcacaattgtatatttatatccttttacaatatttca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29604820 |
tcctccagctagcatataagatcaatatcaatattgtcattaatcttattaaatgagattattgcacaattgtatatttatatccttgtacaatatttca |
29604721 |
T |
|
| Q |
201 |
gattcgtaatatagaaaatagcacagtaccattctttata |
240 |
Q |
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|||| | ||||||||||| || |||||||||||||||||| |
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| T |
29604720 |
gatttgcaatatagaaaacagtacagtaccattctttata |
29604681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 20076078 - 20076297
Alignment:
| Q |
1 |
ttcagtcatgccttgatctgtgcttctgctgtctacattttcaactctgcattaatctcaatcaataacattgtctacaattcaaatctatttttgtaac |
100 |
Q |
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| T |
20076078 |
ttcagttatgccttgatctgcgcgtctgctgtctacattttcaacactgcattaatcttaattaacaaacttgtctacaattcaaatatgtttttgcaac |
20076177 |
T |
|
| Q |
101 |
tcctccagctagcatataagatc-aatatcaatattgtcattaatct-tattaaatgagattattgcacaattgtatatttatatccttttacaatattt |
198 |
Q |
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| T |
20076178 |
tcttccagctagcatataagatcaaacatcaaaattgtcattaatctaaattcaatgagattattgcacaattgtatatttatatgcttgtacaacattt |
20076277 |
T |
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| Q |
199 |
cagattcgtaatatagaaaa |
218 |
Q |
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|||||| | |||||||||| |
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| T |
20076278 |
cagatttgatatatagaaaa |
20076297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 381 - 462
Target Start/End: Original strand, 5399137 - 5399218
Alignment:
| Q |
381 |
cgtgcctggaaacgacaagtcacctctcttctctcgggtatccaagtcataggtcacattgatggcaccacttcttctcaaa |
462 |
Q |
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|||||||||||||| || | |||||||||||||| |||||||||||||| || || |||||||| ||||| ||||||||| |
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| T |
5399137 |
cgtgcctggaaacgtcaggctacctctcttctctctggtatccaagtcattggccatattgatggaaccacaccttctcaaa |
5399218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 381 - 462
Target Start/End: Original strand, 3540134 - 3540215
Alignment:
| Q |
381 |
cgtgcctggaaacgacaagtcacctctcttctctcgggtatccaagtcataggtcacattgatggcaccacttcttctcaaa |
462 |
Q |
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|||||||||||||| || | |||||||||||||| |||||||||| ||| || || |||||||| ||||| ||||||||| |
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| T |
3540134 |
cgtgcctggaaacgtcaggctacctctcttctctccggtatccaagacattggccatattgatggaaccacaccttctcaaa |
3540215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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