View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4512_high_12 (Length: 403)
Name: NF4512_high_12
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 26677723 - 26677327
Alignment:
| Q |
1 |
tataggtcacgggttaggtggtgggaggaggtgatggtggtgatgttgtaatagtggatgttgtgatgcttttttggtggatcggtggtgagaagaaccg |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26677723 |
tataggtcacaggttaggtggtgggaggaggcgatgatggtgatgttgtaatagtggatgttgtgatgcttttttggtggatcggtggtgagaagaaccg |
26677624 |
T |
|
| Q |
101 |
ggtttcgggtt-tgtgtgtggtggcggttttgtggtatgtggcggcggtgatgtagcagggagacagagcatcaaaatcgtttcttacggtgttttcagt |
199 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26677623 |
ggtttcgggttgtgtgtgtggtggcggttttgtggtgtgtggtggcggtgatgtagtagggagacggagcatcaaaatcgtttcttacggtgttttcagt |
26677524 |
T |
|
| Q |
200 |
gatgtctaaatggtggcaaaataggtggtggccaacgggaagggtagcgaagttattggtgtttgattggtgtgatggagatagttgcgtgcgtgatggt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
26677523 |
gatgtctaaatggtggcaaaataggtggtggccaacgggaagggtagcgaggttattggtgtttgcttggtgtgatggagatagttgcgtgcgtgatggt |
26677424 |
T |
|
| Q |
300 |
tg--annnnnnnnggaagtgtggtttttgagtggtggtatggacggggtaggcttggataatctagtttcggattttgtggcagcttgtgatgatgt |
394 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26677423 |
tggttttttttttggaagtgtggtatttgagtggtggtatggacagggtaggcttggataatctagtttcggattttatggcagcttgtgatgatgt |
26677327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 113 - 388
Target Start/End: Complemental strand, 13980936 - 13980655
Alignment:
| Q |
113 |
gtgtgtggtggcggttttgtggtatgtggcggcggtgatgtagcagggagacagagcatcaaaatcgtttcttacggt-gttttcagtgatgtctaaatg |
211 |
Q |
| |
|
||||||||||| ||||||||||| ||||| || |||||| || ||| ||| ||||||| |||||||||||||| | |||||| ||||||| |||| | |
|
|
| T |
13980936 |
gtgtgtggtggtggttttgtggtgtgtggtggtggtgattcagtaggaagatggagcatcggaatcgtttcttacgtttgttttcggtgatgtttaaacg |
13980837 |
T |
|
| Q |
212 |
gtggcaaaataggtggtggccaacgggaagggtagcgaagttattggtgtttgattggtgtgatgg----agatagttgcgtgcgtgatggttgannnnn |
307 |
Q |
| |
|
|||||||||| ||||||||||||||||| || |||||| ||||||||||||| ||||||||||| || ||| ||| ||||||| |||||| |
|
|
| T |
13980836 |
gtggcaaaatgggtggtggccaacgggagggttagcgagattattggtgtttgcgtggtgtgatggaggtagctagctgcttgcgtgacggttgagggtt |
13980737 |
T |
|
| Q |
308 |
nnnggaagtgtggtttttgagtggtggtatggacggggtaggcttggataatctag-tttcggattttgtggcagcttgtga |
388 |
Q |
| |
|
| | ||||||||||| ||||| |||||| |||||||||||||||||||||| |||| |||| |||||| |||||||| |
|
|
| T |
13980736 |
tttgaagttgtggtttttgcatggtgatatggatggggtaggcttggataatctagttttcagattctgtggcggcttgtga |
13980655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 13981054 - 13980929
Alignment:
| Q |
17 |
ggtggtgggaggaggtgatggtggtgatgttgtaatagtggatgttgtgatgcttttttggtggatcggtggtgagaagaaccgggtttcgggtt-tgtg |
115 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||| |||||| || | ||||||||||| |||| |
|
|
| T |
13981054 |
ggtgatgggaggaggtgatggtggtgatgttgtgatagtggaggttgtgatgctattttggtggataggtagtgagatgatacaggtttcgggttgtgtg |
13980955 |
T |
|
| Q |
116 |
tgtggtggcggttttgtggtatgtgg |
141 |
Q |
| |
|
|||||| ||||||||||||| ||||| |
|
|
| T |
13980954 |
tgtggttgcggttttgtggtgtgtgg |
13980929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 13981086 - 13981055
Alignment:
| Q |
18 |
gtggtgggaggaggtgatggtggtgatgttgt |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
13981086 |
gtggtgggaggaggtgatggtggtgatgttgt |
13981055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 13981173 - 13981127
Alignment:
| Q |
3 |
taggtcacgggttaggtggtgggaggaggtgatggtggtgatgttgt |
49 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
13981173 |
taggtcataggttaggtggtgggaggaggtgatggttgtgttgttgt |
13981127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 37321073 - 37321041
Alignment:
| Q |
17 |
ggtggtgggaggaggtgatggtggtgatgttgt |
49 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
37321073 |
ggtggtgggaggagttgatggtggtgatgttgt |
37321041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 228; Significance: 1e-125; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 3 - 392
Target Start/End: Complemental strand, 51267379 - 51267002
Alignment:
| Q |
3 |
taggtcacgggttaggtggtgggaggaggtgatggtggtgatgttgtaatagtggatgttgtgatgcttttttggtggatcggtggtgagaagaaccggg |
102 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
51267379 |
taggtcacggattaggtggtgggaggaggtgatggtggtgatg---------------ttgtgatgcttttttggtggatcagtggtgagaagaaccgga |
51267295 |
T |
|
| Q |
103 |
tttcgggtt-tgtgtgtggtggcggttttgtggtatgtggcggcggtgatgtagcagggagacagagcatcaaaatcgtttcttacggtgttttcagtga |
201 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| |||||||| ||||||| |||||||||||||||||||||| |||| |
|
|
| T |
51267294 |
tttcgggttgtgtgtgtggtggcggttttgtggtgtgtggtggcggtgatgtagtagggagacgaagcatcataatcgtttcttacggtgttttcggtga |
51267195 |
T |
|
| Q |
202 |
tgtctaaatggtggcaaaataggtggtggccaacgggaagggtagcgaagttattggtgtttgattggtgtgatggagatagttgcgtgcgtgatggtt- |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
51267194 |
tgtctaaatggtggcaaaatgggtggtggccaacgggaagggtagcgaggttattagtgtttgtgtggtgtgatggagatagttgcgtgcgtgatggttg |
51267095 |
T |
|
| Q |
301 |
-gannnnnnnnggaagtgtggtttttgagtggtggtatggacggggtaggcttggataatctagtttcggattttgtggcagcttgtgatgat |
392 |
Q |
| |
|
| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51267094 |
gggttttttttggaagtgtggtttttgcgcggtggtatggacggggtaggcttggataatctagtttcggattttgtggcagcttgtgatgat |
51267002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 131 - 356
Target Start/End: Complemental strand, 27261370 - 27261146
Alignment:
| Q |
131 |
gtggtatgtggcggcggtgatgtagcagggagacagagcatcaaaatcgtttcttacggt-gttttcagtgatgtctaaatggtggcaaaataggtggtg |
229 |
Q |
| |
|
||||| ||||| ||||||||||||| ||| |||| |||||||| || |||| ||||||| ||||| |||||||||||||||| ||||||| | ||||| |
|
|
| T |
27261370 |
gtggtgtgtggtggcggtgatgtagtaggcagacggagcatcataa--gttttttacggttgtttttggtgatgtctaaatggtagcaaaatggatggtg |
27261273 |
T |
|
| Q |
230 |
gccaacgggaagggtagcgaagttattggtgtttgattggtgtgatggagatagttgcgtgcgtgatggttgannnnnnnnggaagtgtggtttttgagt |
329 |
Q |
| |
|
| |||||||| || |||||| |||||||||||||| |||||||||||| |||||||| ||||||||||||| ||| |||||||||||| || |
|
|
| T |
27261272 |
gtcaacgggagggttagcgaggttattggtgtttgcgtggtgtgatggaaatagttgcttgcgtgatggttggggttttttggaggtgtggtttttgcgt |
27261173 |
T |
|
| Q |
330 |
ggtggtatggacggggtaggcttggat |
356 |
Q |
| |
|
|||| | |||| ||||||||||||||| |
|
|
| T |
27261172 |
ggtgttttggatggggtaggcttggat |
27261146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 27262118 - 27262041
Alignment:
| Q |
66 |
atgcttttttggtggatcggtggtgagaagaaccgggtttcgggtt-tgtgtgtggtggcggttttgtggtatgtggc |
142 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| |||||| |
|
|
| T |
27262118 |
atgctgttttggtggatcggtggtgagaagaaccgggtttcgggttgtatgtgtggtgaaggttttgtggtgtgtggc |
27262041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 164 - 394
Target Start/End: Complemental strand, 19290193 - 19289960
Alignment:
| Q |
164 |
cagagcatcaaaatcgtttcttacggt-gttttcagtgatgtctaaatggtggcaaaataggtggtggccaacgggaagggt-agcgaagttattggtgt |
261 |
Q |
| |
|
|||||||||| ||| |||||||||||| | ||| ||||||| |||| ||||| ||||| ||||||||||||||||| || | ||||| |||||| |||| |
|
|
| T |
19290193 |
cagagcatcataattgtttcttacggttgcttttggtgatgtttaaacggtggtaaaatgggtggtggccaacgggagggtttagcgaggttattagtgt |
19290094 |
T |
|
| Q |
262 |
ttgattggtgtgatggagatagttgcgtgcgtgatggttgannnnnnnn-ggaagtgtggtttttgagtggtggtatggacggggtaggcttggataatc |
360 |
Q |
| |
|
||| ||||||||||||||||| ||| ||||||||||||| ||| ||||| |||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
19290093 |
ttgcgtggtgtgatggagatagctgcttgcgtgatggttgggggggttttggaggtgtgatttttgcatggtggtatggatggggtaggcttggataatc |
19289994 |
T |
|
| Q |
361 |
tagtttcggattttgtggcagcttgtgatgatgt |
394 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
19289993 |
tagtttcggattttgtggcaacttgtgatgatgt |
19289960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 17 - 298
Target Start/End: Complemental strand, 27844830 - 27844566
Alignment:
| Q |
17 |
ggtggtgggaggaggtgatggtggtgatgttgtaatagtggatgttgtgatgcttttttggtggatcggtggtgagaagaaccgggtttcgggtt-tgtg |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||| |||||| |||||| ||||||||||||| |||| |
|
|
| T |
27844830 |
ggtggtggcaggaggtgatggtggtgatgttgtgatagcggaggttgtgatgctgctttggtggatctgtggtgtgaagaaacgggtttcgggttgtgtg |
27844731 |
T |
|
| Q |
116 |
tgtggtggcggttttgtggtatgtggcggcggtgatgtagcagggagacagagcatcaaaatcgtttcttacgg-tgttttcagtgatgtctaaatggtg |
214 |
Q |
| |
|
|||||||||||| ||||||| ||||| |||| ||||||||||||||||| |||||| || ||| ||||||| ||||||||| |
|
|
| T |
27844730 |
tgtggtggcggtcttgtggtttgtggtggcg-------------------gagcatcaaaatcgttttttacggttgcttttggtgatgtttaaatggtg |
27844650 |
T |
|
| Q |
215 |
gcaaaataggtggtggccaacgggaagg-gtagcgaagttattggtgtttgattggtgtgatggagatagttgcgtgcgtgatgg |
298 |
Q |
| |
|
||||||| ||||| ||||||| ||| || || ||| |||||||||||||| ||||||||||||||||| ||| || ||||||| |
|
|
| T |
27844649 |
gcaaaatgggtgg-ggccaacaggagggtttaacgaggttattggtgtttgcgtggtgtgatggagatagctgcttgtgtgatgg |
27844566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 3958813 - 3958886
Alignment:
| Q |
315 |
gtgtggtttttgagtggtggtatggacggggtaggcttggataatctagtttcggattttgtggcagcttgtga |
388 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3958813 |
gtgtggtttttgcgtgggggtatggatggggtaggcgtggataatctagtttcggattttgtggcagcttgtga |
3958886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 73 - 264
Target Start/End: Original strand, 13994991 - 13995184
Alignment:
| Q |
73 |
tttggtggatcggtggtgagaagaaccgggtttcgggtt-tgtgtgtggtggcggttttgtggtatgtggcggcggtgatgtagcagggagacagagcat |
171 |
Q |
| |
|
||||||||| ||||||||||||||| | ||||| |||| ||||| |||||||||||||||||| ||||| |||||||||| || ||| ||||||||||| |
|
|
| T |
13994991 |
tttggtggaccggtggtgagaagaaacaggttttaggttgtgtgtatggtggcggttttgtggtgtgtggtggcggtgatgcagtaggaagacagagcat |
13995090 |
T |
|
| Q |
172 |
caaaatcgtttcttacgg-tgttttcagtgatgtctaaatggtggcaaaataggtggtggccaacgggaagggtagcgaagttattggtgtttg |
264 |
Q |
| |
|
| ||||||||||||||| |||||| ||||||| |||| ||| ||||||| |||||||||||| |||| || |||||| |||||||||||||| |
|
|
| T |
13995091 |
tagaatcgtttcttacggttgtttttggtgatgtttaaacggttgcaaaatgggtggtggccaatgggagggttagcgaggttattggtgtttg |
13995184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 314 - 388
Target Start/End: Original strand, 13995217 - 13995291
Alignment:
| Q |
314 |
agtgtggtttttgagtggtggtatggacggggtaggcttggataatctagtttcggattttgtggcagcttgtga |
388 |
Q |
| |
|
||||||||||||| ||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13995217 |
agtgtggtttttgcgtggtggtatggatgaggtaggcttgaataatctagtttcggattttgtggcagcttgtga |
13995291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 23649606 - 23649681
Alignment:
| Q |
36 |
ggtggtgatgttgtaatagtggatgttgtgatgcttttttggtggatcggtggtgagaagaaccgggtttcgggtt |
111 |
Q |
| |
|
||||||| ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
23649606 |
ggtggtggtgttgagatagtggaggttgtcatgctgttttggtggatcggtggtgagaagaaacgggtttggggtt |
23649681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 15150593 - 15150521
Alignment:
| Q |
17 |
ggtggtgggaggaggtgatggtggtgatgttgtaatagtggatgttgtgatgcttttttggtggatcggtggtgag |
92 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| ||| |||| ||||||||||| |||||||||||| |||||||| |
|
|
| T |
15150593 |
ggtggtgggaggagttgatggtg---atgttgtgataatggaggttgtgatgctgttttggtggatcagtggtgag |
15150521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 15150483 - 15150435
Alignment:
| Q |
115 |
gtgtggtggcggttttgtggtatgtggcggcggtgatgtagcagggaga |
163 |
Q |
| |
|
||||||| ||||||||||||| |||||||| ||||||| || ||||||| |
|
|
| T |
15150483 |
gtgtggtagcggttttgtggtgtgtggcggtggtgatgcagtagggaga |
15150435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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