View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4512_high_17 (Length: 347)
Name: NF4512_high_17
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_high_17 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 20 - 332
Target Start/End: Complemental strand, 170854 - 170542
Alignment:
| Q |
20 |
aacagttggtaaacaaattgttgagtcaattcactgagaatacaacttatagctacctcattctgaagtgctgaagatgcagttcctcggtcttttggtt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
170854 |
aacagttggtaaacaaattgttgagtcaattcactgagaatacaacttatagctacctcattctgaagtgctgaagatgcagttcctcggtcttttggtt |
170755 |
T |
|
| Q |
120 |
caatagcaagtaagacttccaagaggctcagcaccgatgaaggaaaattcttgaatgtctcagaaacaacacgtttgtaaggttgttgaggtttaaaaat |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
170754 |
caatagcaagtaagacttccaagaggctcagcgccgatgaaggaaaattcttgaatgtctcagaaacaacacgtttgtaaggttgttgaggtttaaaaat |
170655 |
T |
|
| Q |
220 |
tgtcgcatgtggtagcattgacttcttccagtattcttcagaaggagatccacagagcttgaagattttatgcagttgctccacctataatggtagatca |
319 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
170654 |
tgtcgcatgtggtagctttgacttcttccagtattcttcagaaggagatccacagagcttgaagattttatgcagttgctccaactataatggtagatca |
170555 |
T |
|
| Q |
320 |
ccagatcttagtg |
332 |
Q |
| |
|
||||||||||||| |
|
|
| T |
170554 |
ccagatcttagtg |
170542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 202 - 307
Target Start/End: Original strand, 49214571 - 49214676
Alignment:
| Q |
202 |
ttgttgaggtttaaaaattgtcgcatgtggtagcattgacttcttccagtattcttcagaaggagatccacagagcttgaagattttatgcagttgctcc |
301 |
Q |
| |
|
|||||| || ||||||||||| |||||||| | | ||| ||| ||||| ||||||||||||||||| ||||| ||||| || || ||||| ||||| ||| |
|
|
| T |
49214571 |
ttgttgtggcttaaaaattgtagcatgtggcaactttgcctttttccaatattcttcagaaggagaaccacatagcttaaatatcttatgtagttgttcc |
49214670 |
T |
|
| Q |
302 |
acctat |
307 |
Q |
| |
|
|||||| |
|
|
| T |
49214671 |
acctat |
49214676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 307
Target Start/End: Original strand, 47179487 - 47179557
Alignment:
| Q |
237 |
ttgacttcttccagtattcttcagaaggagatccacagagcttgaagattttatgcagttgctccacctat |
307 |
Q |
| |
|
||||||||||||||||||| |||||||| || || || || ||| | || ||||||||||||||||||||| |
|
|
| T |
47179487 |
ttgacttcttccagtattcatcagaaggtgaaccgcatagtttgtatatcttatgcagttgctccacctat |
47179557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University