View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512_high_19 (Length: 334)
Name: NF4512_high_19
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 7766956 - 7766634
Alignment:
| Q |
1 |
gtgagtcctagtaatttgctcaccctggtgatgaagggtgacaaatgtcttggtagcattctctcttatgttctctgctatctttaaacaattctggacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7766956 |
gtgagtcctagtaatttgctcaccctggtgatgaagggtgacaaatgtcttggtagcattctctcttatgttctctgctatctttaaacaattctggacc |
7766857 |
T |
|
| Q |
101 |
gatttcgtagtctcctcagccttgtgaacagcataatcttccaactcctgtacagaatcattctctgatccaccagattcacggagattctttgaattta |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7766856 |
gatttcgtagtctcctcagccttgtgaacagcataatcttccaactcctgtacagaatcattctctgatccaccagattcacggagattctttgaattta |
7766757 |
T |
|
| Q |
201 |
acattatcactctttttgaagacattctcactcaagaagtgcagaatcaaggtgcagtgcgccagtgcggtccttaacgctgcggaagcacaacagtccc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7766756 |
acattatcactctttttgaagacattctcactcaagaagtgcagaatcaaggtgcagtgcgccagtgcggtccttaacgctgcggaagcacaacagtccc |
7766657 |
T |
|
| Q |
301 |
aacaagtaactagggtttttctt |
323 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
7766656 |
aacaagtaactagggtttttctt |
7766634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 45392563 - 45392712
Alignment:
| Q |
1 |
gtgagtcctagtaatttgctcaccctggtgatgaagggtgacaaatgtcttggtagcattctctcttatgttctctgctatctttaaacaattctggacc |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| |||||||| || ||| |
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| T |
45392563 |
gtgactcctagtaatttgctcaccctggtgatgaagggtgaccaatgtcttggcagcatcctctcttatgttctctgctatcttcaaacaattgtgtacc |
45392662 |
T |
|
| Q |
101 |
gatttcgtagtctcctcagccttgtgaacagcataatcttccaactcctg |
150 |
Q |
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||||| ||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
45392663 |
gatttggtagtctcctcagccttgtaaacagcataattctccaactcctg |
45392712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 7216621 - 7216769
Alignment:
| Q |
1 |
gtgagtcctagtaatttgctcaccctggtgatgaagggtgacaaatgtcttggtagcattctctcttatgttctctgctatctttaaacaattctggacc |
100 |
Q |
| |
|
|||| |||||||||| ||||| ||||| ||||| || |||| || ||||||||||||| |||| || | |||||||||||| |||||| | ||| |
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| T |
7216621 |
gtgactcctagtaatctgctcgccctgatgatgcagcatgaccaaagtcttggtagcatcttctcgcatttcctctgctatcttccgacaattgtttacc |
7216720 |
T |
|
| Q |
101 |
gatttcgtagtctcctcagccttgtgaacagcataatcttccaactcct |
149 |
Q |
| |
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||||| || ||||| ||||| |||| ||||||||| || ||||| |||| |
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| T |
7216721 |
gattttgtcgtctcttcagctttgtaaacagcatactcctccaaatcct |
7216769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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