View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4512_high_27 (Length: 302)

Name: NF4512_high_27
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4512_high_27
NF4512_high_27
[»] chr7 (1 HSPs)
chr7 (1-291)||(45954723-45955013)


Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 45954723 - 45955013
Alignment:
Q  1 ataggcgcttttcctcttgtaaataaagttacctacaaaatttacaagttattttcctaaaccttaattcaaaaatatattatttccggttagagtcaaa 100  Q
    ||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45954723 ataggtgcttttcctcttgtgaataaagttacctaccaaatttacaagttattttcctaaaccttaattcaaaaatatattatttccggttagagtcaaa 45954822  T
Q  101 taatgagtaataataaaatcatatatacctggtggccttctttgacaagttgccttgacaaaaacacaccaatgaatctagtacctcccattatgaggat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45954823 taatgagtaataataaaatcatatatacctggtggccttctttgacaagttgccttgacaaaaacacaccaatgaatctagtacctcccattatgaggat 45954922  T
Q  201 tttcttggtgcttgatgctgagacaattaaagaaccttttggctgccatgtttttcttttcaactgtaaccaaaattatttcgagagtata 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45954923 tttcttggtgcttgatgctgagacaattaaagaaccttttggctgccatgtttttcttttcaactgtaaccaaaattatttcgagagtata 45955013  T

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