View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512_high_35 (Length: 250)
Name: NF4512_high_35
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_high_35 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 34320095 - 34320334
Alignment:
| Q |
1 |
tatgttccagtcattttcttttacaatccaaatgagggtagtgaccaaaattccaatgtatcactacttcgaaaatctttatctcaacttttatctaaat |
100 |
Q |
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| T |
34320095 |
tatgttccagtcattttcttttacaatccaaatgagtgtagtgaccaaaattccaaagtatcactacttcgaaaatctttatctcaacttttatctaaat |
34320194 |
T |
|
| Q |
101 |
actacccttttgctggcagattaaaagataaaattaccattgaatgtaatgatcaaggtgtgtcatttttggtcacaaagatcaaaaacaaactttcaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34320195 |
actacccttttgctggcagattaaaagataaaattaccattgaatgtaatgatcaaggtgtgtcatttttggtcacaaagatcaaaaacaaactttcaga |
34320294 |
T |
|
| Q |
201 |
gattctcaaaaaccccacagataaaatattgaaccctttg |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
34320295 |
gattctcaaaaaccccacagataaaatattgaaccctttg |
34320334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 34329075 - 34329242
Alignment:
| Q |
73 |
aaatctttatctcaacttttatctaaatactacccttttgctggcagattaaaagataaaattaccattgaatgtaatgatcaaggtgtgtcatttttgg |
172 |
Q |
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||||||||||||||||||||||| ||||| || ||||||||||| || || ||||||||||||||| | ||||||||||||||||||||| | ||| | | |
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| T |
34329075 |
aaatctttatctcaacttttatccaaatattatccttttgctggaaggttgaaagataaaattaccgtcgaatgtaatgatcaaggtgtgccgtttctag |
34329174 |
T |
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| Q |
173 |
tcacaaagatcaaaaacaaactttcagagattctcaaaaaccccacagataaaatattgaaccctttg |
240 |
Q |
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| T |
34329175 |
tcacaaatgtcaaaaacaaactatcagaagtcctccaaaaccctatagaaaaattgttgaaccctttg |
34329242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 168
Target Start/End: Original strand, 34333175 - 34333267
Alignment:
| Q |
76 |
tctttatctcaacttttatctaaatactacccttttgctggcagattaaaagataaaattaccattgaatgtaatgatcaaggtgtgtcattt |
168 |
Q |
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| T |
34333175 |
tctttatctcaaattctatccatatactacccctttgcaggcaggttcaaagatcagctttccatcgaatgtaacgatcaaggtgcgtcattt |
34333267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 60 - 204
Target Start/End: Complemental strand, 36622659 - 36622515
Alignment:
| Q |
60 |
atcactacttcgaaaatctttatctcaacttttatctaaatactacccttttgctggcagattaaaagataaaattaccattgaatgtaatgatcaaggt |
159 |
Q |
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| T |
36622659 |
atcacaactccgaaaatccttatctcaacttctatctaaatactatcattttgctggtaggattaaagataaaattaccattgaatgtaatgatcaaggt |
36622560 |
T |
|
| Q |
160 |
gtgtcatttttggtcacaaagatcaaaaacaaactttcagagatt |
204 |
Q |
| |
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| T |
36622559 |
gtgttatttttggtcacaaaggtaaaaaacaaactttcagagatt |
36622515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 43 - 240
Target Start/End: Complemental strand, 36627913 - 36627716
Alignment:
| Q |
43 |
gaccaaaattccaatgtatcactacttcgaaaatctttatctcaacttttatctaaatactacccttttgctggcagattaaaagataaaattaccattg |
142 |
Q |
| |
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||||||||||| || |||||| |||||||||||| |||||||||||| |||| |||||||| ||||||||||| || | ||||||| ||||||||||| |
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| T |
36627913 |
gaccaaaattcaaaaatatcacaacttcgaaaatccttatctcaacttctatccaaatactatccttttgctggtaggattaaagatagaattaccattg |
36627814 |
T |
|
| Q |
143 |
aatgtaatgatcaaggtgtgtcatttttggtcacaaagatcaaaaacaaactttcagagattctcaaaaaccccacagataaaatattgaaccctttg |
240 |
Q |
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|||||||||| ||||| |||| ||||| ||||||||||| ||||||||||||||||||||||| |||| || || || ||| | |||||||||||| |
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| T |
36627813 |
aatgtaatgaccaaggggtgttgtttttagtcacaaagataaaaaacaaactttcagagattcttcaaaatcctactgaaaaattgttgaaccctttg |
36627716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 36633456 - 36633283
Alignment:
| Q |
67 |
cttcgaaaatctttatctcaacttttatctaaatactacccttttgctggcagattaaaagataaaattaccattgaatgtaatgatcaaggtgtgtcat |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| | ||||||||| || | ||||||||||||||||||||||| |||||||||||||||| || |
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| T |
36633456 |
cttcgaaaatctttatctcaacttttatctaaattctatcattttgctggtaggattaaagataaaattaccattgaatgcaatgatcaaggtgtgttat |
36633357 |
T |
|
| Q |
167 |
ttttggtcacaaagatcaaaaacaaactttcagagattctcaaaaaccccacagataaaatattgaaccctttg |
240 |
Q |
| |
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|||| ||||||||| | |||||||| ||||||||| |||| |||| ||||| || ||| | |||||||||||| |
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| T |
36633356 |
tttttgtcacaaaggtaaaaaacaatctttcagagtttcttcaaaatcccactgaaaaattgttgaaccctttg |
36633283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 45307066 - 45306840
Alignment:
| Q |
14 |
ttttcttttacaatccaaatgagggtagtgaccaaaattccaatgtatcactacttcgaaaatctttatctcaacttttatctaaatactacccttttgc |
113 |
Q |
| |
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||||||||||| || ||||||| | |||||||||||||| || |||||| ||| ||||||| ||||||||| || |||| ||||||||| ||| || |
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| T |
45307066 |
ttttcttttaccattcaaatgaagacagtgaccaaaattcaaaaatatcacaactcagaaaatccttatctcaaattctatccaaatactacattttcgc |
45306967 |
T |
|
| Q |
114 |
tggcagattaaaagataaaattaccattgaatgtaatgatcaaggtgtgtcatttttggtcacaaagatcaaaaacaaactttcagagattctcaaaaac |
213 |
Q |
| |
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||| || || |||||||||||||||||||||||||| || ||||||||| | ||| | || |||||||| ||||| ||||| || || || ||| |||| |
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| T |
45306966 |
tggtaggttgaaagataaaattaccattgaatgtaacgaccaaggtgtgacgtttatagtgacaaagataaaaaataaactatccgacatcctccaaaat |
45306867 |
T |
|
| Q |
214 |
cccacagataaaatattgaaccctttg |
240 |
Q |
| |
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||| |||| ||| ||||||| ||||| |
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|
| T |
45306866 |
ccctcagaggaaacattgaactctttg |
45306840 |
T |
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