View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4512_high_39 (Length: 240)

Name: NF4512_high_39
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4512_high_39
NF4512_high_39
[»] chr8 (2 HSPs)
chr8 (18-240)||(34319853-34320069)
chr8 (154-240)||(34328891-34328977)
[»] chr5 (3 HSPs)
chr5 (154-240)||(36622744-36622830)
chr5 (132-240)||(36634117-36634222)
chr5 (154-221)||(36628000-36628067)
[»] chr7 (1 HSPs)
chr7 (158-240)||(45307110-45307192)


Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 34319853 - 34320069
Alignment:
Q  18 attaatgttcataattcatacactatataaacacttttatgctatgtgtatggcaatccattcaatcaatatataccagtgagcataaattatattgtac 117  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||     ||||    
T  34319853 attaatgttcataattcatacactatataaacacttt-atgctatgtgtatggcaatccattcaatcaatata--ccagtgagcataaatt-----gtac 34319944  T
Q  118 tagtgagaatattaatcagttgtagagccaatcaaataccat--ggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactc 215  Q
    ||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34319945 tagtgagaatattaatcagttgttgagccaatcaaataccatatggaaattgaattaatttctagagaaaccatcaaaccttcatcaccaactcctactc 34320044  T
Q  216 acctcagaatttttccactttcttt 240  Q
    |||||||||||| ||||||||||||    
T  34320045 acctcagaatttatccactttcttt 34320069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 154 - 240
Target Start/End: Original strand, 34328891 - 34328977
Alignment:
Q  154 taccatggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttttccactttcttt 240  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||| |  |||||||||||    
T  34328891 taccatggaaattgaattaatttctagagaaaccatcaaaccttcatcaccaactccttctcacctcaaaatatacccactttcttt 34328977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 36622830 - 36622744
Alignment:
Q  154 taccatggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttttccactttcttt 240  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | | ||| ||||||||||||    
T  36622830 taccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccttctcaccttaaactttatccactttcttt 36622744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 36634222 - 36634117
Alignment:
Q  132 atcagttgtagagccaatcaaataccatggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttttcc 231  Q
    |||||||| |||| ||||  | ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||   |||| |||| | |||||||    
T  36634222 atcagttggagaggcaattgattaccatggagattgaattactttcaagagaaaccatcaaaccttcatcaccaactc---ctcatctcaaactttttcc 36634126  T
Q  232 actttcttt 240  Q
    |||||||||    
T  36634125 actttcttt 36634117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 154 - 221
Target Start/End: Complemental strand, 36628067 - 36628000
Alignment:
Q  154 taccatggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactcacctca 221  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||  |||||||||    
T  36628067 taccatggaaatagaattactttcaagagaaaccatcaaaccttcatcaccaactccatctcacctca 36628000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 45307192 - 45307110
Alignment:
Q  158 atggaaattgaattactttctagagaaaccatcaaaccttcatcaccaactcctactcacctcagaatttttccactttcttt 240  Q
    |||||||| |||||| |||| ||||||||||||||||||||||| |||||||||  |||||| ||||| | ||||||||||||    
T  45307192 atggaaatggaattagtttccagagaaaccatcaaaccttcatcgccaactcctcatcaccttagaatatatccactttcttt 45307110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University