View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512_high_43 (Length: 237)
Name: NF4512_high_43
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 41517194 - 41516970
Alignment:
| Q |
1 |
aaaatactgatgtgataaacaacttaattaatcaagcatatgcggttatcatagaagtgcttatgcataaattatctagctaacaaaagataaaataaag |
100 |
Q |
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| T |
41517194 |
aaaatactgatgggataaacaacttaataaa----gcatatgcggttatcatagaagtgcttatgcataaattatctagctaacaaaagataaaataaag |
41517099 |
T |
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| Q |
101 |
tcaactgttttcaattcat-------attaactgttttgataagctatcccagagagcttagatagaaaagcttaaaacaactaatagatatgtcataag |
193 |
Q |
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| T |
41517098 |
tcaactgttttcaattcatataagcaattaactgttttgataagctatcccagagagcttggatagaaaagcttaaaacaacttatagatatgtcataag |
41516999 |
T |
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| Q |
194 |
ctgtttctcgcaaacatttatgtgagtag |
222 |
Q |
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| T |
41516998 |
ctgtttgtcgcaaacatttatgtgagtag |
41516970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 28803652 - 28803594
Alignment:
| Q |
46 |
ttatcatagaagtgcttatgcataaattatctagctaacaaaagataaaataaagtcaa |
104 |
Q |
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| T |
28803652 |
ttatcatataagtgcttatatataagttatttcgataacaaaagataaaataaagtcaa |
28803594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 14482126 - 14482184
Alignment:
| Q |
46 |
ttatcatagaagtgcttatgcataaattatctagctaacaaaagataaaataaagtcaa |
104 |
Q |
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| T |
14482126 |
ttatcatataagtgcttatgtataaactatttctataacaaaagataaaataaagtcaa |
14482184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 41620439 - 41620379
Alignment:
| Q |
44 |
ggttatcatagaagtgcttatgcataaattatctagctaacaaaagataaaataaagtcaa |
104 |
Q |
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| T |
41620439 |
ggttatcatacaagtgcttatatataagttatttttgtaacaaaagataaaataaagtcaa |
41620379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 18630605 - 18630662
Alignment:
| Q |
47 |
tatcatagaagtgcttatgcataaattatctagctaacaaaagataaaataaagtcaa |
104 |
Q |
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| T |
18630605 |
tatcatataagcgcttatgcataaactatttcaataacaaaagataaaataaagtcaa |
18630662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 27888714 - 27888682
Alignment:
| Q |
81 |
taacaaaagataaaataaagtcaactgttttca |
113 |
Q |
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| T |
27888714 |
taacaaaagataaaataaagtcgactgttttca |
27888682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 54180844 - 54180768
Alignment:
| Q |
125 |
ctgttttgataagctatcccagagagcttagatagaaaagcttaaaacaactaatagatatgtcataagctgtttct |
201 |
Q |
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| T |
54180844 |
ctgttttcataagctattatggagagcttatataaataagctaaaaacaacttatggacatgtcataagctgtttct |
54180768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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