View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4512_high_5 (Length: 518)
Name: NF4512_high_5
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_high_5 |
 | |
|
| [»] scaffold0595 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0595 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: scaffold0595
Description:
Target: scaffold0595; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 12 - 493
Target Start/End: Original strand, 1204 - 1684
Alignment:
| Q |
12 |
atcatcagatctataactataaatatagggccattgcaccaggtacaatcacttcacttatttcacatatgctcactaatcaacctannnnnnnnnacat |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1204 |
atcatcagatctataactataaatatagggccattgcaccaggtacaatcacttcacttatttcacatatgctcactaatcaacctattttattt-acat |
1302 |
T |
|
| Q |
112 |
gtttgcactcaacctcactttggcggttagagtgtcttttgcaggcacacctccctctttggaggagtgtatgactagtcgcaaaagatccaaccagaac |
211 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1303 |
gtttgcactcagcctcactttggcggttagagtgttttttgcaggcacacctccctctttggaggagtgtatgactagtcgcaaaagatccaaccagaac |
1402 |
T |
|
| Q |
212 |
caccgaagaatgaatcacatgaggtacaccctacttgttcattcagaaacatcagtgctcaccacggggacctgaataaaactatttacagaacaacgat |
311 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1403 |
catcgaagaatgaatcacatgaggtacaccctacttgttcattcagaaacatcggtgctcaccacggggacctcaataaaactatttacagaacaacgat |
1502 |
T |
|
| Q |
312 |
tgcaatcacgccaacatggcgtctcacaacatatgtgtgcaaccttactcctatgcgtagaggacgatgttccaagagttattccccctctcaacaacgt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1503 |
tgcaatcacgccaacatggcgtctcacaacatatgtgtgcaaccttactcctatgcgtagaggacgatgttccaagagttattccccctctcaacaacgt |
1602 |
T |
|
| Q |
412 |
cgtgactcctacaaacaaaggcgcaaaactcagaatcttgcaaattcctacgtaaatgagatgcacgaatagatgggaggga |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1603 |
tgtgactcctacaaacaaaggcgcaaaactcagaatcttgcaaattcctacgtaaatgagatgcacgaatagatgggaggga |
1684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 12 - 493
Target Start/End: Complemental strand, 8328828 - 8328348
Alignment:
| Q |
12 |
atcatcagatctataactataaatatagggccattgcaccaggtacaatcacttcacttatttcacatatgctcactaatcaacctannnnnnnnnacat |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8328828 |
atcatcagatctataactataaatatagggccattgcaccaggtacaatcacttcacttatttcacatatgctcactaatcaacctattttattt-acat |
8328730 |
T |
|
| Q |
112 |
gtttgcactcaacctcactttggcggttagagtgtcttttgcaggcacacctccctctttggaggagtgtatgactagtcgcaaaagatccaaccagaac |
211 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8328729 |
gtttgcactcagcctcactttggcggttagagtgttttttgcaggcacacctccctctttggaggagtgtatgactagtcgcaaaagatccaaccagaac |
8328630 |
T |
|
| Q |
212 |
caccgaagaatgaatcacatgaggtacaccctacttgttcattcagaaacatcagtgctcaccacggggacctgaataaaactatttacagaacaacgat |
311 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8328629 |
catcgaagaatgaatcacatgaggtacaccctacttgttcattcagaaacatcggtgctcaccacggggacctcaataaaactatttacagaacaacgat |
8328530 |
T |
|
| Q |
312 |
tgcaatcacgccaacatggcgtctcacaacatatgtgtgcaaccttactcctatgcgtagaggacgatgttccaagagttattccccctctcaacaacgt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8328529 |
tgcaatcacgccaacatggcgtctcacaacatatgtgtgcaaccttactcctatgcgtagaggacgatgttccaagagttattccccctctcaacaacgt |
8328430 |
T |
|
| Q |
412 |
cgtgactcctacaaacaaaggcgcaaaactcagaatcttgcaaattcctacgtaaatgagatgcacgaatagatgggaggga |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8328429 |
tgtgactcctacaaacaaaggcgcaaaactcagaatcttgcaaattcctacgtaaatgagatgcacgaatagatgggaggga |
8328348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University