View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4512_high_8 (Length: 461)

Name: NF4512_high_8
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4512_high_8
NF4512_high_8
[»] chr2 (1 HSPs)
chr2 (80-414)||(31142037-31142370)
[»] chr3 (2 HSPs)
chr3 (80-300)||(15258760-15258979)
chr3 (278-405)||(15715963-15716090)
[»] chr4 (3 HSPs)
chr4 (80-216)||(30231689-30231827)
chr4 (261-391)||(30236857-30236987)
chr4 (83-178)||(18747556-18747651)
[»] chr1 (1 HSPs)
chr1 (278-405)||(30776352-30776479)
[»] chr7 (2 HSPs)
chr7 (127-300)||(13938057-13938231)
chr7 (127-300)||(39287087-39287259)
[»] chr5 (1 HSPs)
chr5 (80-133)||(41145457-41145510)
[»] chr8 (1 HSPs)
chr8 (359-407)||(39225232-39225282)


Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 80 - 414
Target Start/End: Original strand, 31142037 - 31142370
Alignment:
Q  80 aacatatagcaaactagaaccagttagctaagcatttggttaattaattaggagagtatgttctcttgctggtagctttatgttaccgctggttttgttt 179  Q
    ||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  31142037 aacatatagtaaactagaaccagtaagctaagcatttagttaattaattaggagagtatgtgctcttgctggtagctttatgttactgctggttttgttt 31142136  T
Q  180 tttggcatcagtctcggttggttgaggtactatgtggtgtgctgccgnnnnnnnnngcagctatagtagttcttttgtggcactgtctgatgttctgctg 279  Q
    ||||||||||||||||||||||||||||||| ||||||||||| | |         |||||| |||||||| | ||||||||||||||    ||||||||    
T  31142137 tttggcatcagtctcggttggttgaggtactgtgtggtgtgctactg-tgttttttgcagctgtagtagttttgttgtggcactgtctacgattctgctg 31142235  T
Q  280 taggcataatctgctggtgctcctgtcatgctgctatgtgtttttggattttagttttaggtgttaacttgctttttaaaaaactttaaagcgatggaat 379  Q
    |||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||| | ||||||    
T  31142236 taggcataatctactggtgcttatgtcatgctgctatgtgtttttggattttagttttaggtgttcgcttgcttttttaaaaactttaaagtgctggaat 31142335  T
Q  380 gacagattttgaacaactcaggaatggaaatatat 414  Q
    |||||||||||||||||||| ||||||||||||||    
T  31142336 gacagattttgaacaactcatgaatggaaatatat 31142370  T

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Target: chr3 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 80 - 300
Target Start/End: Complemental strand, 15258979 - 15258760
Alignment:
Q  80 aacatatagcaaactagaaccagttagctaagcatttggttaattaattaggagagtatgttctcttgctggtagctttatgttaccgctggttttgttt 179  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||    
T  15258979 aacatatagtaaactagaaccagttagctaagcatttggttaattaattaggagagtatctgctcttgctggtagctttatgttactgctggttttgttt 15258880  T
Q  180 tttggcatcagtctcggttggttgaggtactatgtggtgtgctgccgnnnnnnnnngcagctatagtagttcttttgtggcactgtctgatgttctgctg 279  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |         |||||| |||||||||| |||||||||||||||  |||||||||    
T  15258879 tttggcatcagtctcggttggttgaggtactgtgtggtgtgctgctg-tgttttttgcagctgtagtagttctgttgtggcactgtctgtggttctgctg 15258781  T
Q  280 taggcataatctgctggtgct 300  Q
    |||||||||||||| ||||||    
T  15258780 taggcataatctgccggtgct 15258760  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 278 - 405
Target Start/End: Original strand, 15715963 - 15716090
Alignment:
Q  278 tgtaggcataatctgctggtgctcctgtcatgctgctatgtgtttttggattttagttttaggtgttaacttgctttttaaaaaactttaaagcgatgga 377  Q
    |||||||| |||||| |||||||  | |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  15715963 tgtaggcacaatctgttggtgcttttttcatgctgctatgtgtttttggattttagttttaggtgttcacttgctttttaataaactttaaagcgctgga 15716062  T
Q  378 atgacagattttgaacaactcaggaatg 405  Q
    ||||||||||||||| ||||||||||||    
T  15716063 atgacagattttgaaaaactcaggaatg 15716090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 80 - 216
Target Start/End: Original strand, 30231689 - 30231827
Alignment:
Q  80 aacatatagcaaactagaaccagttagctaagcatttggttaattaattaggagagtatgttctcttgctggtagctttatgttaccgctggttt--tgt 177  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||  |||    
T  30231689 aacatatagtaaactagaactagttagctaagcatttggttaattaattaggagagtatgtgctcttgctggtagctttatgttattgctggttttctgt 30231788  T
Q  178 tttttggcatcagtctcggttggttgaggtactatgtgg 216  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  30231789 tttttggcatcagtctcggttggttgaggtactgtgtgg 30231827  T

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Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 261 - 391
Target Start/End: Original strand, 30236857 - 30236987
Alignment:
Q  261 actgtctgatgttctgctgtaggcataatctgctggtgctcctgtcatgctgctatgtgtttttggattttagttttaggtgttaacttgctttttaaaa 360  Q
    ||||||||  ||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30236857 actgtctgcggttctgctgtaggcataatttgctggtgcttctatcatgctgctatgtgtttttggattttagttttaggtgttcacttgctttttaaaa 30236956  T
Q  361 aactttaaagcgatggaatgacagattttga 391  Q
    || ||||||||| ||||||||||||||||||    
T  30236957 aattttaaagcgctggaatgacagattttga 30236987  T

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Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 83 - 178
Target Start/End: Complemental strand, 18747651 - 18747556
Alignment:
Q  83 atatagcaaactagaaccagttagctaagcatttggttaattaattaggagagtatgttctcttgctggtagctttatgttaccgctggttttgtt 178  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18747651 atatagtaaactagaaccagttagctaagcatttggttaattaattaagagagtatgttctcttgctggtagctttatgttactgctggttttgtt 18747556  T

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Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 278 - 405
Target Start/End: Original strand, 30776352 - 30776479
Alignment:
Q  278 tgtaggcataatctgctggtgctcctgtcatgctgctatgtgtttttggattttagttttaggtgttaacttgctttttaaaaaactttaaagcgatgga 377  Q
    |||||||| |||||| |||||||  | |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  30776352 tgtaggcacaatctgttggtgcttttttcatgctgctatgtgtttttggattttagttttaggtgttcacttgctttttaataaactttaaagcgctgga 30776451  T
Q  378 atgacagattttgaacaactcaggaatg 405  Q
    ||||||||||||||| ||||||||||||    
T  30776452 atgacagattttgaaaaactcaggaatg 30776479  T

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Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 127 - 300
Target Start/End: Original strand, 13938057 - 13938231
Alignment:
Q  127 ttaggagagtatgttctcttgctggtagctttatgttaccgctggttttgttttttggcatcagtctcggttggttgaggtactatgtggtgtgctgccg 226  Q
    |||||||||||| | |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| |    
T  13938057 ttaggagagtatctgctcttgctggtagctttatgttactgctggtcttgttttttggcatcagtctcggttggttgaggtattgtgtggtgtgctgctg 13938156  T
Q  227 -nnnnnnnnngcagctatagtagttcttttgtggcactgtctgatgttctgctgtaggcataatctgctggtgct 300  Q
              |||||| |||||||||| |||||| ||| ||    ||||||||||||||||||||||||||||||    
T  13938157 tgttttttttgcagctgtagtagttctgttgtggtactatccatggttctgctgtaggcataatctgctggtgct 13938231  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 127 - 300
Target Start/End: Original strand, 39287087 - 39287259
Alignment:
Q  127 ttaggagagtatgttctcttgctggtagctttatgttaccgctggttttgttttttggcatcagtctcggttggttgaggtactatgtggtgtgctgccg 226  Q
    |||||||||||| | |||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||  |    
T  39287087 ttaggagagtatctgctcttgttggtagctttatgttactgctggtcttgttttttggcatcagtctcggttggttgaggtactgtgtggtgtgctgttg 39287186  T
Q  227 nnnnnnnnngcagctatagtagttcttttgtggcactgtctgatgttctgctgtaggcataatctgctggtgct 300  Q
             |||||| |||||||||| |||||||||| || |  |||||| |||||||||||| ||||||||||    
T  39287187 -tgttttttgcagctgtagtagttctgttgtggcactatccgtggttctgttgtaggcataatatgctggtgct 39287259  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 41145457 - 41145510
Alignment:
Q  80 aacatatagcaaactagaaccagttagctaagcatttggttaattaattaggag 133  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41145457 aacatatagtaaactagaaccagttagctaagcatttggttaattaattaggag 41145510  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 407
Target Start/End: Complemental strand, 39225282 - 39225232
Alignment:
Q  359 aaaactttaaagcgatggaatgaca--gattttgaacaactcaggaatgga 407  Q
    |||||||||||||| ||||||||||  ||||||||||||||| ||||||||    
T  39225282 aaaactttaaagcgttggaatgacatagattttgaacaactcgggaatgga 39225232  T

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