View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4512_low_13 (Length: 413)

Name: NF4512_low_13
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4512_low_13
NF4512_low_13
[»] chr7 (8 HSPs)
chr7 (1-397)||(19709404-19709800)
chr7 (80-169)||(20146438-20146527)
chr7 (88-175)||(25705384-25705471)
chr7 (57-153)||(8316071-8316168)
chr7 (226-308)||(20143064-20143145)
chr7 (78-175)||(7955200-7955297)
chr7 (120-153)||(19155477-19155510)
chr7 (120-153)||(20754876-20754909)
[»] chr5 (3 HSPs)
chr5 (1-397)||(16604066-16604487)
chr5 (77-166)||(17026512-17026602)
chr5 (77-158)||(24840674-24840755)
[»] chr3 (9 HSPs)
chr3 (59-305)||(5633607-5633862)
chr3 (61-156)||(11520033-11520129)
chr3 (112-256)||(20097437-20097587)
chr3 (209-303)||(11519874-11519968)
chr3 (131-169)||(20097591-20097629)
chr3 (1-45)||(5633520-5633564)
chr3 (215-356)||(14426348-14426494)
chr3 (1-38)||(20097662-20097699)
chr3 (58-153)||(8766650-8766746)
[»] scaffold0043 (2 HSPs)
scaffold0043 (78-262)||(57752-57943)
scaffold0043 (356-397)||(57572-57613)
[»] chr2 (7 HSPs)
chr2 (197-397)||(29709654-29709860)
chr2 (73-303)||(27867482-27867719)
chr2 (87-147)||(28279422-28279482)
chr2 (208-304)||(28279550-28279646)
chr2 (358-397)||(22389851-22389890)
chr2 (58-153)||(16815761-16815855)
chr2 (58-153)||(16854918-16855012)
[»] scaffold1429 (2 HSPs)
scaffold1429 (94-254)||(540-708)
scaffold1429 (5-38)||(437-470)
[»] chr6 (4 HSPs)
chr6 (73-305)||(12972923-12973161)
chr6 (209-308)||(15576996-15577095)
chr6 (78-127)||(2878223-2878272)
chr6 (3-36)||(18388653-18388686)
[»] chr1 (6 HSPs)
chr1 (134-290)||(25131023-25131186)
chr1 (134-271)||(74001-74146)
chr1 (123-177)||(47376471-47376525)
chr1 (78-116)||(14796736-14796774)
chr1 (78-116)||(14805610-14805648)
chr1 (215-267)||(23222326-23222377)
[»] chr8 (2 HSPs)
chr8 (85-158)||(16053445-16053518)
chr8 (358-397)||(30545503-30545542)
[»] chr4 (4 HSPs)
chr4 (219-303)||(1697206-1697290)
chr4 (78-115)||(9346398-9346435)
chr4 (61-105)||(12023786-12023830)
chr4 (65-105)||(15788456-15788496)
[»] scaffold0049 (1 HSPs)
scaffold0049 (78-127)||(40531-40580)


Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 19709800 - 19709404
Alignment:
Q  1 tttgcatggagactcaaagtggtttcacaaaggatatagtaataagaattaagcgtt--ttgaaaggctcaagataccaaaacaagtgcctcgtgtgtat 98  Q
    |||||||||| ||||||| |||||||| ||||||||||||||||||||||||| ||   ||| |||||||||||||||||||||||||||| || |||||    
T  19709800 tttgcatggaaactcaaa-tggtttcataaaggatatagtaataagaattaagtgtggcttgcaaggctcaagataccaaaacaagtgccttgtatgtat 19709702  T
Q  99 gataatacaaccaatagtctataaagaacgaccgcaatttcgagcaaaaataacaatccacatgaaacacatatataaagaattataagagtgaaatcta 198  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19709701 gataatacaaccaatagtctctaaagaacgatcgcaatttcgagcaaacataacaatccacatggaacacatatataaagaattataagagtgaaatcta 19709602  T
Q  199 tatttgggtaaaaatttcaccggttatgctatacaaaattgtaatggtgaatatttctgagtattttccgcagtaagccccagaagttatcgtgctcttg 298  Q
    ||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||    
T  19709601 tatttaggtaaaaatttcaccg-ttatactatacaaaattgtaatggtgaatatttctgagtattttccgcagcaagtctcagaagttatcgtgctcttg 19709503  T
Q  299 aacttcagaatatccctctgacgttaacggttagaataattctccgagactaaaacaaaatttttgaaaaagggaaggttatgcaattcatgtaaaaac 397  Q
    |||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19709502 aacttcagaatatccctctggcattaatggttagaataattctccgagactaaaacaaaatttttgaaaaagggaaggttatgcaattcatgtaaaaac 19709404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 20146527 - 20146438
Alignment:
Q  80 acaagtgcctcgtgtgtatgataatacaaccaatagtctataaagaacgaccgcaatttcgagcaaaaataacaatccacatgaaacaca 169  Q
    ||||||||||  ||||||||||||||||||| |||||| || ||||| |||| ||||||||||| ||| |||||||||||||| ||||||    
T  20146527 acaagtgccttatgtgtatgataatacaaccgatagtccatgaagaatgaccacaatttcgagctaaactaacaatccacatggaacaca 20146438  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 25705471 - 25705384
Alignment:
Q  88 ctcgtgtgtatgataatacaaccaatagtctataaagaacgaccgcaatttcgagcaaaaataacaatccacatgaaacacatatata 175  Q
    |||||||||||||| |||||||||||||||| || ||||| ||| || |||  |||||||||||||||| ||||  |||||| |||||    
T  25705471 ctcgtgtgtatgatgatacaaccaatagtctgtatagaacaaccacactttgtagcaaaaataacaatcaacatagaacacacatata 25705384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 8316168 - 8316071
Alignment:
Q  57 tttgaaaggctcaagataccaaa-acaagtgcctcgtgtgtatgataatacaaccaatagtctataaagaacgaccgcaatttcgagcaaaaataaca 153  Q
    |||||||| |||||| ||||||| | || |||||||||||||| ||||||  ||| || |||  ||||||||||||| || |||||||||||||||||    
T  8316168 tttgaaagactcaaggtaccaaagaaaaatgcctcgtgtgtattataatattaccgattgtccgtaaagaacgaccgtaaattcgagcaaaaataaca 8316071  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 20143145 - 20143064
Alignment:
Q  226 gctatacaaaattgtaatggtgaatatttctgagtattttccgcagtaagccccagaagttatcgtgctcttgaacttcagaa 308  Q
    |||||||||| |||| ||||| |||||||| |||||| |||||  | |||||| | |||||||||||||||||||| ||||||    
T  20143145 gctatacaaagttgtgatggtaaatatttcagagtatcttccgtggcaagcccaa-aagttatcgtgctcttgaacatcagaa 20143064  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 78 - 175
Target Start/End: Complemental strand, 7955297 - 7955200
Alignment:
Q  78 aaacaagtgcctcgtgtgtatgataatacaaccaatagtctataaagaacgaccgcaatttcgagcaaaaataacaatccacatgaaacacatatata 175  Q
    |||||||||| || |||||||||||||| || ||||||  | || | ||||| || | |||| |||||||||||||||| ||||| |||||| |||||    
T  7955297 aaacaagtgcatcatgtgtatgataatataatcaatagcatgtagataacgatcgaactttccagcaaaaataacaatcgacatggaacacacatata 7955200  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 19155510 - 19155477
Alignment:
Q  120 taaagaacgaccgcaatttcgagcaaaaataaca 153  Q
    |||||||||||||||| |||||||||||||||||    
T  19155510 taaagaacgaccgcaaattcgagcaaaaataaca 19155477  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 20754909 - 20754876
Alignment:
Q  120 taaagaacgaccgcaatttcgagcaaaaataaca 153  Q
    |||||||||||||||| |||||||||||||||||    
T  20754909 taaagaacgaccgcaaattcgagcaaaaataaca 20754876  T

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Target: chr5 (Bit Score: 96; Significance: 6e-47; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 16604066 - 16604487
Alignment:
Q  1 tttgcatggagactcaaagtggtttcacaaaggatatagtaataagaattaagcgt---tttgaaaggctcaagataccaaaacaagtgcctcgtgtgta 97  Q
    ||||||||||| ||||||||| |||| || ||||||||  ||||| ||| ||   |   ||||||||||||||| ||||||| |||||| |||||| |||    
T  16604066 tttgcatggaggctcaaagtgatttcccataggatataacaataataataaaagatggctttgaaaggctcaaggtaccaaatcaagtgtctcgtgagta 16604165  T
Q  98 tgataatacaaccaatagtctataaagaacgaccgcaatttcgagcaaaaataacaatccacatgaaacacatatataaa--gaattata------agag 189  Q
    |||||||||||   ||||||  |||||||||||||||||||| || |||||||||||||  |||| |||||| || ||||  ||||||||      ||||    
T  16604166 tgataatacaaatgatagtccgtaaagaacgaccgcaatttcaag-aaaaataacaatctgcatggaacacacatgtaaaaagaattatagcagtaagag 16604264  T
Q  190 tgaaatctatatttgggtaaaaatttcaccggttatgctatacaaaattgtaatggtgaatatttctgagtattttccgcagtaagccccagaagttatc 289  Q
    || ||| || |||||| | |||||||||| |||| ||||||||| |||||||||||||||| ||||||||||| || || ||||| | ||| ||||||||    
T  16604265 tggaatataaatttggatcaaaatttcactggttgtgctatacataattgtaatggtgaatttttctgagtatctttcgtagtaaactccaaaagttatc 16604364  T
Q  290 gtgctcttgaacttcagaa------tatccctctgacgttaacggttagaataattctccgagactaaaacaaa---------atttttgaaaaagggaa 374  Q
    |||||||||||||||  ||      || || ||||  || || |||| |||||||| ||| |||||||||||||         ||||||| |||||| ||    
T  16604365 gtgctcttgaacttcgaaagtaagctagccttctgctgtgaatggttggaataattgtccaagactaaaacaaattttttgacatttttggaaaaggaaa 16604464  T
Q  375 ggttatgcaattcatgtaaaaac 397  Q
    |||||||||||||||||||||||    
T  16604465 ggttatgcaattcatgtaaaaac 16604487  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 17026602 - 17026512
Alignment:
Q  77 aaaacaagtgcctcgtgtgtatgataatacaaccaatagtctataaagaacgaccgcaatttcgagcaaaaataacaatcc-acatgaaac 166  Q
    ||||||| || ||||||||||||| ||||||| | ||||||| ||| ||||||||  ||||||||||||||||| |||||| |||||||||    
T  17026602 aaaacaaatgtctcgtgtgtatgacaatacaaacgatagtctgtaatgaacgaccaaaatttcgagcaaaaatagcaatccaacatgaaac 17026512  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 24840755 - 24840674
Alignment:
Q  77 aaaacaagtgcctcgtgtgtatgataatacaaccaatagtctataaagaacgaccgcaatttcgagcaaaaataacaatcca 158  Q
    ||||||| |||||| ||| ||||| ||||||||  ||||||||||||||| ||||| ||||||| | ||||||| |||||||    
T  24840755 aaaacaaatgcctcatgtatatgaaaatacaactgatagtctataaagaatgaccgaaatttcgtgtaaaaatagcaatcca 24840674  T

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Target: chr3 (Bit Score: 94; Significance: 9e-46; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 59 - 305
Target Start/End: Original strand, 5633607 - 5633862
Alignment:
Q  59 tgaaaggctcaagataccaaaa-caagtgcctcgtgtgtatgataatacaaccaatagtctataaagaacgaccgcaatttcgagcaaaaataacaatcc 157  Q
    ||||||||||||| || ||||| |||||| ||| ||||||| ||||||||||||||||||  |||| |||||||||||||| |||||||| |||||||||    
T  5633607 tgaaaggctcaaggtatcaaaatcaagtgtctcatgtgtataataatacaaccaatagtccgtaaataacgaccgcaattttgagcaaaactaacaatcc 5633706  T
Q  158 acatgaaacacatatata--aagaattata------agagtgaaatctatatttgggtaaaaatttcaccggttatgctatacaaaattgtaatggtgaa 249  Q
    |  || |||||| |||||  |||||||| |      |||||| ||| ||||||||| | ||||| ||||||||||||||||||| ||| |||||||||||    
T  5633707 atgtggaacacagatatagaaagaattagattaggaagagtgcaatatatatttggtttaaaatctcaccggttatgctatacataatggtaatggtgaa 5633806  T
Q  250 tatttctgagtattttccgcagtaagccccagaagttatcgtgctcttgaacttca 305  Q
    ||||| ||||||| ||  |||  |||||||| |||||||||||||| |||||||||    
T  5633807 tatttatgagtatcttttgcacaaagccccaaaagttatcgtgctcgtgaacttca 5633862  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 61 - 156
Target Start/End: Complemental strand, 11520129 - 11520033
Alignment:
Q  61 aaaggctcaagataccaaaa-caagtgcctcgtgtgtatgataatacaaccaatagtctataaagaacgaccgcaatttcgagcaaaaataacaatc 156  Q
    |||||||| || |||||||| ||| || ||||||||||||| ||||||||||||||||| ||| ||| ||||| |||||| |||||||||| |||||    
T  11520129 aaaggctctaggtaccaaaaacaaatgtctcgtgtgtatgacaatacaaccaatagtctgtaacgaatgaccgaaatttcaagcaaaaatagcaatc 11520033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 112 - 256
Target Start/End: Complemental strand, 20097587 - 20097437
Alignment:
Q  112 atagtctataaagaacgaccgcaatttcgagcaaaaataacaatccacatgaaa--cacatatataaagaattat------aagagtgaaatctatattt 203  Q
    |||||||||||| || |||| || ||| ||||||||||||||||||||||||||  |||||||| ||||||||||      | ||||||| | |||||||    
T  20097587 atagtctataaaaaatgaccacacttttgagcaaaaataacaatccacatgaaacacacatatagaaagaattatagtagaatgagtgaactatatattt 20097488  T
Q  204 gggtaaaaatttcaccggttatgctatacaaaattgtaatggtgaatatttct 256  Q
    |||| ||||| |  | |||||||||||||  ||||||||| || |||||||||    
T  20097487 gggtcaaaatctttctggttatgctatac--aattgtaatagtaaatatttct 20097437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 209 - 303
Target Start/End: Complemental strand, 11519968 - 11519874
Alignment:
Q  209 aaaatttcaccggttatgctatacaaaattgtaatggtgaatatttctgagtattttccgcagtaagccccagaagttatcgtgctcttgaactt 303  Q
    ||||| ||||||||||||||||||| |||| || |||||| | ||| ||||||| |||| ||||||||  ||  || |||||||||||| |||||    
T  11519968 aaaatatcaccggttatgctatacataattatagtggtgactttttttgagtatcttccacagtaagctacaatagctatcgtgctcttaaactt 11519874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 169
Target Start/End: Complemental strand, 20097629 - 20097591
Alignment:
Q  131 cgcaatttcgagcaaaaataacaatccacatgaaacaca 169  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  20097629 cgcaatttcgagcaaaaataacaatccacatggaacaca 20097591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5633520 - 5633564
Alignment:
Q  1 tttgcatggagactcaaagtggtttcacaaaggatatagtaataa 45  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||||    
T  5633520 tttgcatggaggctcaaagtggtttcgcaaaggatataataataa 5633564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 356
Target Start/End: Complemental strand, 14426494 - 14426348
Alignment:
Q  215 tcaccggttatgctatacaaaattgtaatggtgaatatttctgagtattttccgcagtaagccccagaagttatcgtgctcttgaacttcaga------a 308  Q
    |||||| |||||||||||| |||||||||||||| | ||||||||||| ||  | || |||||||| | ||||  ||||||||||| ||| ||      |    
T  14426494 tcaccgattatgctatacagaattgtaatggtgact-tttctgagtatcttatgtagcaagccccaaacgttactgtgctcttgaagttcggaaataaga 14426396  T
Q  309 tatccctctgacgttaacggttagaataattctccgagactaaaacaa 356  Q
    ||||||||||  |  || ||||||||||||||| | ||||||||||||    
T  14426395 tatccctctgctgacaatggttagaataattctacaagactaaaacaa 14426348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20097699 - 20097662
Alignment:
Q  1 tttgcatggagactcaaagtggtttcacaaaggatata 38  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  20097699 tttgcatggaggctcaaagtggtttcacaaagtatata 20097662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 153
Target Start/End: Original strand, 8766650 - 8766746
Alignment:
Q  58 ttgaaaggctcaagataccaaa-acaagtgcctcgtgtgtatgataatacaaccaatagtctataaagaacgaccgcaatttcgagcaaaaataaca 153  Q
    |||||||||||||| ||||||| | || |||||||||||||| ||||   |||  || |||| |||||||||  ||||| ||| |||||||||||||    
T  8766650 ttgaaaggctcaaggtaccaaacaaaattgcctcgtgtgtataataacctaactgatcgtctgtaaagaacggacgcaaattcaagcaaaaataaca 8766746  T

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Target: scaffold0043 (Bit Score: 79; Significance: 8e-37; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 78 - 262
Target Start/End: Complemental strand, 57943 - 57752
Alignment:
Q  78 aaacaagtgcctcgtgtgtatgataatacaaccaatagtctataaagaacgaccgcaatttcgagcaaaaataacaatccacatg--aaacacatatata 175  Q
    |||||||||||| |||||||||||||||||||||||| || ||||| |||| || ||||||||||||||||||||| || |||||  | ||||||||| |    
T  57943 aaacaagtgccttgtgtgtatgataatacaaccaataatccataaa-aacggccacaatttcgagcaaaaataacattcgacatggaacacacatataga 57845  T
Q  176 aagaattat------aagagtgaaatctatatttgggtaaaaatttcaccggttatgctatacaaaattgtaatggtgaatatttctgagtat 262  Q
    |||||||||      ||||||| ||| ||||||||| | ||||| |||| || |||||||||| ||||||||||||||||||||| |||||||    
T  57844 aagaattatagtagaaagagtggaatatatatttggctcaaaatctcactggctatgctataccaaattgtaatggtgaatatttatgagtat 57752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 57613 - 57572
Alignment:
Q  356 aaatttttgaaaaagggaaggttatgcaattcatgtaaaaac 397  Q
    ||||||||| |||||| |||||||||||||||||||||||||    
T  57613 aaatttttggaaaaggaaaggttatgcaattcatgtaaaaac 57572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 197 - 397
Target Start/End: Complemental strand, 29709860 - 29709654
Alignment:
Q  197 tatatttgggtaaaaatttcaccggttatgctatacaaaattgtaatggtgaatatttctgagtattttccgcagtaagccccagaagttatcgtgctct 296  Q
    ||||||||| | ||||| |||  |||||| |||||||||||||||||| ||||||||| | ||||| |||||||  || ||||| |||||||||||||||    
T  29709860 tatatttggctcaaaatctcattggttatactatacaaaattgtaatgatgaatattttttagtatcttccgcaacaatccccaaaagttatcgtgctct 29709761  T
Q  297 tgaacttcagaa------tatccctctgacgttaacggttagaataattctccgagactaaaacaaaatttttgaaaaagggaaggttatgcaattcatg 390  Q
    |||||||   ||      || |||||||  ||||| |||| |||||||||||||||||||||||||  |||||| |||||| ||||||||||||||||||    
T  29709760 tgaactttgaaagtaagctagccctctgctgttaatggttggaataattctccgagactaaaacaatttttttggaaaaggaaaggttatgcaattcatg 29709661  T
Q  391 taaaaac 397  Q
    | |||||    
T  29709660 ttaaaac 29709654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 73 - 303
Target Start/End: Original strand, 27867482 - 27867719
Alignment:
Q  73 taccaaaacaagtgcctcgtgtgtatgataatacaaccaatagtctataaagaacgaccgcaatttcgagcaaaaataacaatccacatgaaacacatat 172  Q
    |||||||||||||| |||||||||||||||||| |||| ||||||  || ||||||||   ||||||||| ||||||| ||||||||||| |||||| ||    
T  27867482 taccaaaacaagtgtctcgtgtgtatgataataaaaccgatagtccgtagagaacgacataaatttcgaggaaaaatagcaatccacatggaacacacat 27867581  T
Q  173 at---aaagaattata----agagtgaaatctatatttgggtaaaaatttcaccggttatgctatacaaaattg-taatggtgaatatttctgagtattt 264  Q
    ||   |||||| ||||    | |||| ||  ||||||||| | ||||| |||||||||||| ||||||||||||  ||||||||   ||| ||||||| |    
T  27867582 atatgaaagaactatagtagaaagtggaa-atatatttggcttaaaatctcaccggttatgttatacaaaattgaaaatggtgaccttttttgagtatct 27867680  T
Q  265 tccgcagtaagccccagaagttatcgtgctcttgaactt 303  Q
    | ||||| ||||||||  |||| | ||||||||||||||    
T  27867681 ttcgcagcaagccccaatagttgttgtgctcttgaactt 27867719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 28279422 - 28279482
Alignment:
Q  87 cctcgtgtgtatgataatacaaccaatagtctataaagaacgaccgcaatttcgagcaaaa 147  Q
    |||||||||||||| ||||||||| |||||| ||| |||||  ||| ||||||||||||||    
T  28279422 cctcgtgtgtatgacaatacaaccgatagtccatagagaacttccgaaatttcgagcaaaa 28279482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 304
Target Start/End: Original strand, 28279550 - 28279646
Alignment:
Q  208 aaaaatttcaccggttatgctatacaaaattgtaatggtgaatatttctgagtattttccgcagtaagccccagaagttatcgtgctcttgaacttc 304  Q
    |||||| |||||||||||| |||| | |||| || | |||||| ||| ||||||| ||||| || |||| ||| |||||| ||||||||| ||||||    
T  28279550 aaaaatctcaccggttatgttatagataattatagtagtgaatttttttgagtatcttccggagcaagcaccaaaagttaccgtgctcttaaacttc 28279646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 358 - 397
Target Start/End: Original strand, 22389851 - 22389890
Alignment:
Q  358 atttttgaaaaagggaaggttatgcaattcatgtaaaaac 397  Q
    ||||||| |||||| |||||||||||||||||||||||||    
T  22389851 atttttggaaaaggaaaggttatgcaattcatgtaaaaac 22389890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 153
Target Start/End: Original strand, 16815761 - 16815855
Alignment:
Q  58 ttgaaaggctcaagataccaaa-acaagtgcctcgtgtgtatgataatacaaccaatagtctataaagaacgaccgcaatttcgagcaaaaataaca 153  Q
    |||||||||||||| ||||||| | |||||  || ||||||| |||||  |||| || |||  ||||||||| |||||| |||||||||||||||||    
T  16815761 ttgaaaggctcaaggtaccaaagaaaagtg--tcatgtgtattataatctaaccgatcgtccgtaaagaacggccgcaaattcgagcaaaaataaca 16815855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 153
Target Start/End: Original strand, 16854918 - 16855012
Alignment:
Q  58 ttgaaaggctcaagataccaaa-acaagtgcctcgtgtgtatgataatacaaccaatagtctataaagaacgaccgcaatttcgagcaaaaataaca 153  Q
    |||||||||||||| ||||||| | |||||  || ||||||| |||||  |||| || |||  ||||||||| |||||| |||||||||||||||||    
T  16854918 ttgaaaggctcaaggtaccaaagaaaagtg--tcatgtgtattataatctaaccgatcgtccgtaaagaacggccgcaaattcgagcaaaaataaca 16855012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1429 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: scaffold1429
Description:

Target: scaffold1429; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 94 - 254
Target Start/End: Original strand, 540 - 708
Alignment:
Q  94 tgtatgataatacaaccaatagtctataaagaacgaccgcaatttcgagcaaaaataacaatccacatgaaa--cacatatataaagaattat------a 185  Q
    ||||||||||||||||||||||||| |||| ||| || ||||||| |||||||||||||||||||| || ||  ||||||||  || ||||||      |    
T  540 tgtatgataatacaaccaatagtctgtaaataactactgcaattttgagcaaaaataacaatccacttggaacgcacatatagtaaaaattatagtagaa 639  T
Q  186 agagtgaaatctatatttgggtaaaaatttcaccggttatgctatacaaaattgtaatggtgaatattt 254  Q
    | |||| ||| ||||||||| | |||||  || |||||||| |||||||||||||||||||||||||||    
T  640 aaagtggaatatatatttggcttaaaatcccagcggttatgttatacaaaattgtaatggtgaatattt 708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1429; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 437 - 470
Alignment:
Q  5 catggagactcaaagtggtttcacaaaggatata 38  Q
    ||||||| ||||||||||||||||||||||||||    
T  437 catggaggctcaaagtggtttcacaaaggatata 470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 73 - 305
Target Start/End: Original strand, 12972923 - 12973161
Alignment:
Q  73 taccaaaacaagtgcctcgtgtgtatgataatacaaccaatagtctataaagaacgaccgcaatttcgagcaaaaataacaatccacatgaaacacatat 172  Q
    |||||| ||||||||||| |||||||||||||| |||  ||||||  || ||| |||  | |||||| ||||||||||  || ||||||| |||||| ||    
T  12972923 taccaagacaagtgcctcatgtgtatgataatataactgatagtccctagagagcgagagaaatttcaagcaaaaatagaaaaccacatggaacacacat 12973022  T
Q  173 ata---aagaatta--ta-agagtgaaatctatatttgggtaaaaatttcaccggttatgctatacaaaattgtaatggtgaatatttctgagtattttc 266  Q
    |||   ||||||||  || | |||| ||| ||||||||| | ||||| ||||||||||||||||||||||||| |||| ||||||||| ||  ||| |||    
T  12973023 atatgaaagaattaagtagaaagtggaatatatatttggctcaaaatctcaccggttatgctatacaaaattgaaatgatgaatatttttgtttatcttc 12973122  T
Q  267 cgcagtaagccccagaagttatcgtgctcttgaacttca 305  Q
    ||||  || ||| |  | ||||||||||||| |||||||    
T  12973123 cgcatcaaaccctaacatttatcgtgctcttcaacttca 12973161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 308
Target Start/End: Original strand, 15576996 - 15577095
Alignment:
Q  209 aaaatttcaccggttatgctatacaaaattgtaatggtgaatatttctgagtattttccgcagtaagccccagaagttatcgtgctcttgaacttcagaa 308  Q
    ||||| ||||| ||||||||||||| |||||||||||||  | ||||||||||| |||| ||| |||| ||| || ||||  ||||||||||||| ||||    
T  15576996 aaaatctcaccagttatgctatacataattgtaatggtgcctttttctgagtatcttccacagcaagctccaaaatttattttgctcttgaactttagaa 15577095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 2878272 - 2878223
Alignment:
Q  78 aaacaagtgcctcgtgtgtatgataatacaaccaatagtctataaagaac 127  Q
    |||||| |||||||||||||||| ||||| ||||||||||| || |||||    
T  2878272 aaacaaatgcctcgtgtgtatgaaaatacgaccaatagtctgtagagaac 2878223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 18388686 - 18388653
Alignment:
Q  3 tgcatggagactcaaagtggtttcacaaaggata 36  Q
    ||||||||| ||||||||||||||||||||||||    
T  18388686 tgcatggaggctcaaagtggtttcacaaaggata 18388653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 134 - 290
Target Start/End: Original strand, 25131023 - 25131186
Alignment:
Q  134 aatttcgagcaaaaataacaatccacatgaaacacatatat--aaagaattata------agagtgaaatctatatttgggtaaaaatttcaccggttat 225  Q
    ||||| ||||||||||||| ||||||||| |||| | ||||  |||||||||||      | |||| ||| || |||||| | ||||| |||||||||||    
T  25131023 aattttgagcaaaaataactatccacatggaacatacatatggaaagaattatagaagaaatagtggaatataaatttggctcaaaatctcaccggttat 25131122  T
Q  226 gctatacaaaattgtaatggtgaatatttctgagtattttccgcagtaagccccagaagttatcg 290  Q
    ||||||||  ||||||||||||||||||| |||||||  ||||||| |||||||| ||| |||||    
T  25131123 gctatacatgattgtaatggtgaatattt-tgagtatcatccgcagcaagccccaaaagctatcg 25131186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 271
Target Start/End: Original strand, 74001 - 74146
Alignment:
Q  134 aatttcgagcaaaaataacaatccacatg--aaacacatatataaagaattat------aagagtgaaatctatatttgggtaaaaatttcaccggttat 225  Q
    ||||||||| |||||||||||||||||||  | ||||||||| ||| |||| |      ||||||| ||| ||||||||| | ||||| ||||  |||||    
T  74001 aatttcgagtaaaaataacaatccacatggaacacacatatagaaataattgtagtagaaagagtggaatatatatttggctcaaaatctcactagttat 74100  T
Q  226 gctatacaaaattgtaatggtgaatatttctgagtattttccgcag 271  Q
    | |||||| ||||||  ||||||| |||| ||||||| ||||||||    
T  74101 gttatacataattgtgttggtgaacatttttgagtatcttccgcag 74146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 47376471 - 47376525
Alignment:
Q  123 agaacgaccgcaatttcgagcaaaaataacaatccacatgaaacacatatataaa 177  Q
    |||||||||  |||||| | |||||||||||||||||||| ||||||||||||||    
T  47376471 agaacgaccaaaatttccaacaaaaataacaatccacatggaacacatatataaa 47376525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 14796774 - 14796736
Alignment:
Q  78 aaacaagtgcctcgtgtgtatgataatacaaccaatagt 116  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  14796774 aaacaagtgtctcgtgtgtatgataatacgaccaatagt 14796736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 14805648 - 14805610
Alignment:
Q  78 aaacaagtgcctcgtgtgtatgataatacaaccaatagt 116  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  14805648 aaacaagtgtctcgtgtgtatgataatacgaccaatagt 14805610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 23222377 - 23222326
Alignment:
Q  215 tcaccggttatgctatacaaaattgtaatggtgaatatttctgagtattttcc 267  Q
    |||| |||||||||||||| |||||||||||||| | ||||||||||| ||||    
T  23222377 tcactggttatgctatacataattgtaatggtgact-tttctgagtatcttcc 23222326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 85 - 158
Target Start/End: Original strand, 16053445 - 16053518
Alignment:
Q  85 tgcctcgtgtgtatgataatacaaccaatagtctataaagaacgaccgcaatttcgagcaaaaataacaatcca 158  Q
    |||||||||||||||| |||| |||  |||||||||| |||||| ||| |||||||||||||||||||||||||    
T  16053445 tgcctcgtgtgtatgacaatataactgatagtctatagagaacgtccgaaatttcgagcaaaaataacaatcca 16053518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 358 - 397
Target Start/End: Complemental strand, 30545542 - 30545503
Alignment:
Q  358 atttttgaaaaagggaaggttatgcaattcatgtaaaaac 397  Q
    |||||||||||| | |||||||||||||||||||||||||    
T  30545542 atttttgaaaaaagaaaggttatgcaattcatgtaaaaac 30545503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 1697206 - 1697290
Alignment:
Q  219 cggttatgctatacaaaattgtaatggtgaatatttctgagtattttccgcagtaagccccagaagttatcgtgctcttgaactt 303  Q
    ||||||||||||||| ||||||| || ||| | ||||||||||| ||| |||  |||  | | ||||||||||||||||||||||    
T  1697206 cggttatgctatacataattgtagtgatgactttttctgagtatcttcagcaacaagttctaaaagttatcgtgctcttgaactt 1697290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 9346398 - 9346435
Alignment:
Q  78 aaacaagtgcctcgtgtgtatgataatacaaccaatag 115  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  9346398 aaacaagtgcctcgtgtgtatgacaatacgaccaatag 9346435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 12023786 - 12023830
Alignment:
Q  61 aaaggctcaagataccaaaacaagtgcctcgtgtgtatgataata 105  Q
    ||||||||||  |||||||||||||| ||| ||||||||||||||    
T  12023786 aaaggctcaaagtaccaaaacaagtgtctcatgtgtatgataata 12023830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 15788456 - 15788496
Alignment:
Q  65 gctcaagataccaaaacaagtgcctcgtgtgtatgataata 105  Q
    ||||||| |||||||||||||| |||| |||||||||||||    
T  15788456 gctcaaggtaccaaaacaagtgtctcgcgtgtatgataata 15788496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 40531 - 40580
Alignment:
Q  78 aaacaagtgcctcgtgtgtatgataatacaaccaatagtctataaagaac 127  Q
    ||||||||||||||||||||||| |||||  |||||||||| || |||||    
T  40531 aaacaagtgcctcgtgtgtatgaaaatacggccaatagtctgtagagaac 40580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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