View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512_low_15 (Length: 400)
Name: NF4512_low_15
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 6 - 398
Target Start/End: Original strand, 27846252 - 27846644
Alignment:
| Q |
6 |
actttttagcaagttcctattattaggatgatgataaaa-tatcatgttttaatgtgttatccaactatgagtgcatattggtacaaaatcaactagatc |
104 |
Q |
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| T |
27846252 |
actttttagtaagttcctattattatgatgatgataaaaatatcatgttttaatgtgttatccaactatgagtgcatattggtacaaaatcaactagatc |
27846351 |
T |
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| Q |
105 |
ttgaatttctaatacaaacatacatatatgatatgaaaaacaaaactgaaaagtaagtatgatgtggatggtgtattgaaatgagatagtcccattatag |
204 |
Q |
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| T |
27846352 |
ttgaatttctaatacaaacatacatatatgatatgaaaa-caaaactgaaaagtaagtatgatgtggatggtgtattgaaatgagatagtcccattatag |
27846450 |
T |
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| Q |
205 |
tgttagtggtggtgtttggtgcaaaaaggaaagaaggggtccgggaagcaatcactatcaaaaactgttacttaatagtctcattctttcctttctggcc |
304 |
Q |
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| T |
27846451 |
tgttagtggtggtgtttggtgcaaaaaggaaagaaggggtccgggaagcaatcactatcaaaaactgttacttaatagtctcattctttcctttctggcc |
27846550 |
T |
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| Q |
305 |
ggcgccgacagctttggttgaaggaatcaaaacgatacagatggccatgaccatgatatgctgtgctgctcacccgacaacctcctatgcttct |
398 |
Q |
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| T |
27846551 |
ggcgccgacagctttggttgaaggaatcaaaacgatacagatggccatgaccatgatatgctgtgctgctcacccgacaacctcttttgcttct |
27846644 |
T |
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