View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4512_low_16 (Length: 376)
Name: NF4512_low_16
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_low_16 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 12 - 357
Target Start/End: Original strand, 38218771 - 38219118
Alignment:
| Q |
12 |
acagaaacagaacaaaaatattctcata--aaagcttttgatatcgtgtagaagctattttaattaaagttgcttttggaatagaaagaatatatgatat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38218771 |
acagaaacagaacaaaaatattctcatataaaagcttttgatatcgtgttgaagctattttaattaaagttgcttttggaatagaaagaatatatgatat |
38218870 |
T |
|
| Q |
110 |
gctaaatgaggaagtaaagaaaggaataaaaaatgaagtacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttgagttgcata |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38218871 |
gctaaatgaggaagtaaagaaaggaataaaaaatgaagtacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttaagttgcata |
38218970 |
T |
|
| Q |
210 |
tcaattctaccaaataaatactctttcttggattgaaagccagagccagaggttttatcaagagaaagagatagaagttgaccaccattgaatatcttag |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38218971 |
tcaattctaccaaataaatactctttcttggattggaagccagagccagaagttttatcaagagaaagagatagaagttgaccaccattgaatatcttag |
38219070 |
T |
|
| Q |
310 |
cacggtggtcaccccaagttagatcaaagtcttggttgaagttagcag |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38219071 |
cacggtggtcaccccaagttagatcaaagtcttggttgaagttagcag |
38219118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 12 - 357
Target Start/End: Original strand, 38214552 - 38214897
Alignment:
| Q |
12 |
acagaaacagaacaaaaatattctcataaaagcttttgatatcgtgtagaagctattttaattaaagttgcttttggaatagaaagaatatatgatatgc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
38214552 |
acagaaacagaacaaaaatattctcataaaagcttttgatatcgtgttgaagctattttaattaaagttgctttcggaatagaaagaatatatgatatgc |
38214651 |
T |
|
| Q |
112 |
taaatgaggaagtaaagaaaggaataaaaaatgaagtacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
38214652 |
taaatgaggaagtaaagaaaggaataaaaaatgaagtacatacatagtaagcagtaacagttccagcagaatttccagcaacaagtttaagttgcatatc |
38214751 |
T |
|
| Q |
212 |
aattctaccaaataaatactctttcttggattgaaagccagagccagaggttttatcaagagaaagagatagaagttgaccaccattgaatatcttagca |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38214752 |
aattctaccaaataaatactctttcttggattggaagccagagccagaagttttatcaagagaaagagatagaagttgaccaccattgaatatcttagca |
38214851 |
T |
|
| Q |
312 |
cggtggtcaccccaagttagatcaaagtcttggttgaagttagcag |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38214852 |
cggtggtcaccccaagttagatcaaagtcttggttgaagttagcag |
38214897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 152 - 345
Target Start/End: Complemental strand, 35016443 - 35016250
Alignment:
| Q |
152 |
tacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagcca |
251 |
Q |
| |
|
||||||||||||||| ||||| |||||||| || ||||||||||| || || |||||||||||||| ||||||| |||||| |||| |||| |||||| |
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|
| T |
35016443 |
tacgtagtaagcagtgacagtgccagcagagttgccagcaacaagcttaagctgcatatcaattctcccaaataggtactctctctttgatttgaagcca |
35016344 |
T |
|
| Q |
252 |
gagccagaggttttatcaagagaaagagatagaagttgaccaccattgaatatcttagcacggtggtcaccccaagttagatcaaagtcttggt |
345 |
Q |
| |
|
||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
35016343 |
gagccagagactttgtcaagggaaagtgatagaagttgaccaccattgaatatcttagcacggttatcaccccatgttagatcaaagtcttggt |
35016250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 148 - 345
Target Start/End: Complemental strand, 42990854 - 42990657
Alignment:
| Q |
148 |
tacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaa |
247 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| || || |
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|
| T |
42990854 |
tacgtacatagtaagcagtgacggttccagcagagtttccagcaaccagtttgagttgcatatcaattctaccgaataagtactctttcttggactggaa |
42990755 |
T |
|
| Q |
248 |
gccagagccagaggttttatcaagagaaagagatagaagttgaccaccattgaatatcttagcacggtggtcaccccaagttagatcaaagtcttggt |
345 |
Q |
| |
|
||||||||| ||| ||| || |||||||| || ||||| |||||||| |||||| ||||||||||||| || ||||| ||||||||||| ||||||| |
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|
| T |
42990754 |
gccagagccggagactttgtcgagagaaagtgaaagaagctgaccaccgttgaatgtcttagcacggtgatcgccccatgttagatcaaaatcttggt |
42990657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 162 - 343
Target Start/End: Complemental strand, 53492500 - 53492319
Alignment:
| Q |
162 |
gcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagccagagg |
261 |
Q |
| |
|
||||| ||||| |||||||| || |||| ||||||||| ||||||||||||||| | ||||| | || || || |||||||||||||| || ||||||| |
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|
| T |
53492500 |
gcagtgacagtgccagcagagttgccaggaacaagtttaagttgcatatcaattttgccaaaaaggtattcatttttggattgaaagcctgaaccagagg |
53492401 |
T |
|
| Q |
262 |
ttttatcaagagaaagagatagaagttgaccaccattgaatatcttagcacggtggtcaccccaagttagatcaaagtcttg |
343 |
Q |
| |
|
||||||||||| |||| |||||||| |||| |||| ||| |||||||| || ||||| |||| |||||||||||| |
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|
| T |
53492400 |
acttatcaagagatagagtaagaagttggccactgttgagtattttagcacgaccatccccccatgttatatcaaagtcttg |
53492319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 271
Target Start/End: Complemental strand, 53494834 - 53494719
Alignment:
| Q |
156 |
tagtaagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagc |
255 |
Q |
| |
|
||||||||||| || ||||| ||||| ||||||| ||||| ||||| ||||||||||| | ||||| | ||| || |||||||||||||| ||||| | |
|
|
| T |
53494834 |
tagtaagcagtgaccgttcctgcagagtttccaggtacaagcttgagctgcatatcaatgttgccaaagagatattcattcttggattgaaatccagaac |
53494735 |
T |
|
| Q |
256 |
cagaggttttatcaag |
271 |
Q |
| |
|
|||||| ||| ||||| |
|
|
| T |
53494734 |
cagaggctttgtcaag |
53494719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 293
Target Start/End: Original strand, 53489558 - 53489692
Alignment:
| Q |
159 |
taagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagccag |
258 |
Q |
| |
|
|||||||| || || ||||| |||||||||| ||||||||| | |||||| ||||| | ||| | | ||| | || |||||||||||||||||||||| |
|
|
| T |
53489558 |
taagcagtgactgtgccagctgaatttccaggaacaagtttaatttgcatgtcaatctttccataaagatattgattattggattgaaagccagagccag |
53489657 |
T |
|
| Q |
259 |
aggttttatcaagagaaagagatagaagttgacca |
293 |
Q |
| |
|
||||| |||| ||||| |||| ||||| |||||| |
|
|
| T |
53489658 |
aggttctatctagagacagagtaagaagctgacca |
53489692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 53501955 - 53501885
Alignment:
| Q |
144 |
gaagtacgtacgtagtaagcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaat |
214 |
Q |
| |
|
||||||| |||||| || ||||| ||||| |||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
53501955 |
gaagtacttacgtaatatgcagtgacagtgccagcagagtttccagggacaagtttgagttgcatatcaat |
53501885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 279
Target Start/End: Complemental strand, 53498814 - 53498697
Alignment:
| Q |
162 |
gcagtaacagttccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagccagagg |
261 |
Q |
| |
|
||||| ||||| |||||||| ||||| | |||||| || | |||||||||||| | |||||||| || || || |||||||||||||| || ||||||| |
|
|
| T |
53498814 |
gcagtgacagtgccagcagagtttcctggaacaagcttaatctgcatatcaattttgccaaataagtattcatttttggattgaaagcctgaaccagagg |
53498715 |
T |
|
| Q |
262 |
ttttatcaagagaaagag |
279 |
Q |
| |
|
||| |||||||| |||| |
|
|
| T |
53498714 |
ctttgtcaagagatagag |
53498697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 343
Target Start/End: Complemental strand, 37188450 - 37188281
Alignment:
| Q |
174 |
ccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagccagaggttttatcaagag |
273 |
Q |
| |
|
|||||||| || |||| ||||||||| || |||||||||||| | ||||| | || || || ||||||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
37188450 |
ccagcagagttgccaggaacaagtttaagctgcatatcaattttgccaaaaaggtattcatttttggattgaaaaccagagccagaggatttgtcaagag |
37188351 |
T |
|
| Q |
274 |
aaagagatagaagttgaccaccattgaatatcttagcacggtggtcaccccaagttagatcaaagtcttg |
343 |
Q |
| |
|
| | || |||||||| ||| |||| ||| |||||||| || ||||| |||| |||||||||||| |
|
|
| T |
37188350 |
acaaagtaagaagttggccattgttgagtattttagcacgtccatccccccatgttatatcaaagtcttg |
37188281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 268
Target Start/End: Complemental strand, 16941552 - 16941458
Alignment:
| Q |
174 |
ccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagccagaggttttatc |
268 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||| |||||| | ||||| || ||||| | ||||| |||||||||||||||| | |||||| |
|
|
| T |
16941552 |
ccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagccagagccagaagatttatc |
16941458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 268
Target Start/End: Complemental strand, 17012217 - 17012123
Alignment:
| Q |
174 |
ccagcagaatttccagcaacaagtttgagttgcatatcaattctaccaaataaatactctttcttggattgaaagccagagccagaggttttatc |
268 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||| |||||| | ||||| || ||||| | ||||| |||||||||||||||| | |||||| |
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|
| T |
17012217 |
ccagcagagttaccagctacaagtttgagttgcatgtcaattttcccaaacaagtactcatatttggaacgaaagccagagccagaagatttatc |
17012123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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