View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4512_low_24 (Length: 324)

Name: NF4512_low_24
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4512_low_24
NF4512_low_24
[»] chr2 (1 HSPs)
chr2 (11-308)||(32851691-32851984)


Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 11 - 308
Target Start/End: Original strand, 32851691 - 32851984
Alignment:
Q  11 cagagagagtatacaatattcaggtctagtgatactatcagcaagtgatgacaattatcaaccattgtagtgttccctaattttcttttacttcatgtga 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32851691 cagagagagtatacaatattcaggtctagtgatactatcagcaagtaatgacaattatcaaccattgtagtgttccctaattttcttttacttcatgtga 32851790  T
Q  111 acaagatatgttacataggtatcatgttccaagttctactaatacacacacagtcattcaaaccagctttgttttccttctagacatgttcctttcacca 210  Q
    ||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32851791 acaagatatgttacataggtatcatg----aagttctactaatacacacacagtcattcaaaccagctttattttccttctagacatgttcctttcacca 32851886  T
Q  211 aaggtttttaccatcgtgcgaaaattccaaaaataggcatttatattgatagaagagaaacaaaaaaggtcaatattttggcgatcatgtaatagttg 308  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32851887 aaggtttttaccgtcgtgcgaaaattccaaaaataggcatttatattgatagaagagaaacaaaaaaggtcaatattttggcgatcatgtaatagttg 32851984  T

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