View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4512_low_25 (Length: 324)

Name: NF4512_low_25
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4512_low_25
NF4512_low_25
[»] chr5 (8 HSPs)
chr5 (32-307)||(12008486-12008761)
chr5 (37-307)||(11919058-11919328)
chr5 (213-307)||(11790552-11790646)
chr5 (213-306)||(11754411-11754504)
chr5 (76-307)||(11748091-11748322)
chr5 (213-307)||(11834769-11834863)
chr5 (214-266)||(11751312-11751364)
chr5 (213-263)||(11882381-11882431)
[»] chr6 (3 HSPs)
chr6 (213-308)||(6106080-6106175)
chr6 (241-308)||(6129756-6129823)
chr6 (213-278)||(6858649-6858714)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 32 - 307
Target Start/End: Original strand, 12008486 - 12008761
Alignment:
Q  32 gacctaacattaacttccaaggcaagctcttgagaaagtctttctcagcataacgcgacgtgagaatcccaatgaaaatcaatacagaagtggcagatgt 131  Q
    |||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||| || ||||| |||||||     
T  12008486 gaccgaacaataacttccaaggcaagctcttgagaaagtccttctcagcataacgcgatgtgagtattccaatgaaaatcaagacggaagttgcagatgc 12008585  T
Q  132 gaagagagatattgcgtctgctaagagaaatgcagtaaatatgttgtcatgcaagaagatgggcaaaccagttttgtcgtcgtttccacctgggaccgta 231  Q
    ||||||||||| ||||||||| | |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12008586 gaagagagatactgcgtctgccatgagaaatgcagtgaatatgttgtcatgtaagaagatgggcaaaccagttttgtcgtcatttccacctgggaccgta 12008685  T
Q  232 aaggctgcagcaaacatgatggtagtgatgagagtacccacaattgtataagatgctgctgtgtcttttgcccatt 307  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||    
T  12008686 aaggctgcagcaaacatgatggtagtgatgagtgttcccacaattgtataagatgttgctgtgtcttttgcccatt 12008761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 37 - 307
Target Start/End: Original strand, 11919058 - 11919328
Alignment:
Q  37 aacattaacttccaaggcaagctcttgagaaagtctttctcagcataacgcgacgtgagaatcccaatgaaaatcaatacagaagtggcagatgtgaaga 136  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||| || || ||||| || ||||||||||| ||||||||||| ||||||||||    
T  11919058 aacaataacttccaaggcaagctcttgaggaagtctttctcagcataacgagatgttagaattcctatgaaaatcaacacagaagtggccgatgtgaaga 11919157  T
Q  137 gagatattgcgtctgctaagagaaatgcagtaaatatgttgtcatgcaagaagatgggcaaaccagttttgtcgtcgtttccacctgggaccgtaaaggc 236  Q
    |||||| ||||||||| | |||||||| ||| |||| | |||||| |||||||||||||||||| || |  |  | |||||| || ||||| ||||| ||    
T  11919158 gagataatgcgtctgccatgagaaatgtagtgaatacgctgtcattcaagaagatgggcaaaccggtatcttgattgtttccgcccgggactgtaaatgc 11919257  T
Q  237 tgcagcaaacatgatggtagtgatgagagtacccacaattgtataagatgctgctgtgtcttttgcccatt 307  Q
    ||| |||||||||| ||||||||| |||||||| ||||||||  |||||| |||||| |||||||||||||    
T  11919258 tgcggcaaacatgacggtagtgataagagtacctacaattgtgaaagatgttgctgtctcttttgcccatt 11919328  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 307
Target Start/End: Original strand, 11790552 - 11790646
Alignment:
Q  213 gtttccacctgggaccgtaaaggctgcagcaaacatgatggtagtgatgagagtacccacaattgtataagatgctgctgtgtcttttgcccatt 307  Q
    ||||||||| ||||| || || |||||||||||||||||||| |||||||||||| | |||| |||| | ||  ||||||| |||||||||||||    
T  11790552 gtttccaccagggacagtgaaagctgcagcaaacatgatggttgtgatgagagtagcaacaagtgtaaatgaacctgctgtttcttttgcccatt 11790646  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 213 - 306
Target Start/End: Original strand, 11754411 - 11754504
Alignment:
Q  213 gtttccacctgggaccgtaaaggctgcagcaaacatgatggtagtgatgagagtacccacaattgtataagatgctgctgtgtcttttgcccat 306  Q
    ||||||||| ||||| || || |||||||||||||||||||| ||||| || ||| |||||| |||| | ||| ||||||| ||||||||||||    
T  11754411 gtttccaccagggacagtgaaagctgcagcaaacatgatggttgtgataagtgtagccacaagtgtaaatgattctgctgtctcttttgcccat 11754504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 307
Target Start/End: Complemental strand, 11748322 - 11748091
Alignment:
Q  76 tcagcataacgcgacgtgagaatcccaatgaaaatcaatacagaagtggcagatgtgaagagagatattgcgtctgctaagagaaatgcagtaaatatgt 175  Q
    |||||||||||||  |||||||| |||||||| |  |  || ||||| | ||| ||||| ||||||||||| |||||||  | |||  || ||||| | |    
T  11748322 tcagcataacgcgctgtgagaattccaatgaagagaaggactgaagttgaagaagtgaaaagagatattgcatctgctattataaacacattaaatgtat 11748223  T
Q  176 tgtcatgcaagaagatgggcaaaccagttttgtcgtcgtttccacctgggaccgtaaaggctgcagcaaacatgatggtagtgatgagagtacccacaat 275  Q
    ||||||||||||||| ||| |  ||| | |  |  | ||||||||| ||||| || || |||||||| ||||||||||| |||||||| ||| | ||||     
T  11748222 tgtcatgcaagaagaggggaattccactgtcttgattgtttccaccagggacagtgaaagctgcagcgaacatgatggttgtgatgagtgtagcaacaag 11748123  T
Q  276 tgtataagatgctgctgtgtcttttgcccatt 307  Q
    |||| | ||  | ||||| |||||||||||||    
T  11748122 tgtaaatgaaccagctgtatcttttgcccatt 11748091  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 307
Target Start/End: Original strand, 11834769 - 11834863
Alignment:
Q  213 gtttccacctgggaccgtaaaggctgcagcaaacatgatggtagtgatgagagtacccacaattgtataagatgctgctgtgtcttttgcccatt 307  Q
    ||||||||| ||||| || || |||||||||||||||||||| |||||||| ||| | |||| |||| | ||  | ||||| |||||||||||||    
T  11834769 gtttccaccagggacagtgaaagctgcagcaaacatgatggttgtgatgagtgtagcaacaagtgtaaatgaaccagctgtatcttttgcccatt 11834863  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 11751312 - 11751364
Alignment:
Q  214 tttccacctgggaccgtaaaggctgcagcaaacatgatggtagtgatgagagt 266  Q
    |||||||| ||||| || || ||||||||||||||||| ||||||||||||||    
T  11751312 tttccaccagggactgtgaaagctgcagcaaacatgatagtagtgatgagagt 11751364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 263
Target Start/End: Original strand, 11882381 - 11882431
Alignment:
Q  213 gtttccacctgggaccgtaaaggctgcagcaaacatgatggtagtgatgag 263  Q
    ||||||||| ||||| || || |||||||||||||||||||| ||||||||    
T  11882381 gtttccaccagggacagtgaaagctgcagcaaacatgatggttgtgatgag 11882431  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 213 - 308
Target Start/End: Complemental strand, 6106175 - 6106080
Alignment:
Q  213 gtttccacctgggaccgtaaaggctgcagcaaacatgatggtagtgatgagagtacccacaattgtataagatgctgctgtgtcttttgcccattg 308  Q
    |||||| ||||| || || || ||||||||||||||||||||| ||||||||||||||||||||||  ||||   |||| | ||||||||||||||    
T  6106175 gtttcctcctggaacagtgaaagctgcagcaaacatgatggtaatgatgagagtacccacaattgtgaaagaacttgctatatcttttgcccattg 6106080  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 308
Target Start/End: Original strand, 6129756 - 6129823
Alignment:
Q  241 gcaaacatgatggtagtgatgagagtacccacaattgtataagatgctgctgtgtcttttgcccattg 308  Q
    ||||||||||||||| |||| |||||||| ||||||||  ||||   |||||| ||||||||||||||    
T  6129756 gcaaacatgatggtaatgattagagtaccaacaattgtgaaagaacttgctgtatcttttgcccattg 6129823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 278
Target Start/End: Original strand, 6858649 - 6858714
Alignment:
Q  213 gtttccacctgggaccgtaaaggctgcagcaaacatgatggtagtgatgagagtacccacaattgt 278  Q
    |||||| ||||| || || || ||||||||||||||||||||| | || |||||||||| ||||||    
T  6858649 gtttcctcctggaacagtgaaagctgcagcaaacatgatggtaataataagagtacccataattgt 6858714  T

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