View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512_low_27 (Length: 321)
Name: NF4512_low_27
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 160 - 316
Target Start/End: Complemental strand, 3735133 - 3734977
Alignment:
| Q |
160 |
tgatattcctttaaagtgatgttggtacgtggcagtgatttatctacgtctcaatatttacctttgaaacttccttttatgtttcatatgtaggaaagtc |
259 |
Q |
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| T |
3735133 |
tgatattcctttaaagtgatgttggtacgtggcattgatttatctacgtctcaatatatacctttgaaacttcctattatgattcatatgtaggaaagtc |
3735034 |
T |
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| Q |
260 |
tccatgaagctgcctagctaggtcaataaaactatggctgctgagtgttttatatat |
316 |
Q |
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| T |
3735033 |
tccatgaagctgcctagcttggtcactaaaactatggctgctgagtgttttatatat |
3734977 |
T |
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Target: chr2 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 36261689 - 36261552
Alignment:
| Q |
1 |
ttttagataaagtcataactattgacaccctcnnnnnnnnnnnnctattgatatgaacacataccgtcactttatttcaaatttatttcttaattgtgcc |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36261689 |
ttttagataaagtcataactattgacaccctcaaaaaaaaaaaactactgatatgaacacataccgtcactttatttcaaatttatttcttaattgtgct |
36261590 |
T |
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| Q |
101 |
tgtgtcggctaatagttctcctcctatgctgttttgtc |
138 |
Q |
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| T |
36261589 |
tgtgtcggctaatagttctcctcctatgctgttttgtc |
36261552 |
T |
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