View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512_low_29 (Length: 317)
Name: NF4512_low_29
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 28184039 - 28184335
Alignment:
| Q |
1 |
atactccctgtcgacaactttgagcaaatctttctcgcaaaatcttgaaggatgaagttctccattgacaccggttgtgagtgttctcttagcaacttgg |
100 |
Q |
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| T |
28184039 |
atactccctgtcgacaactttgagcaaatctttctcgcaaaatcttgaaggatgaagttctccattgacaccggttgtgagtgttctcttagcaacttgg |
28184138 |
T |
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| Q |
101 |
cttacagtgttcttgacagtgttcctcaaattctcttccaaatgcctcaagtcaattgcttggcaaagcgcgatcaagaaagtggaagacatgagcttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28184139 |
cttacagtgttcttgacagtgttcctcaaattctcttccaaatgcctcaagtcaattgcttggcaaagcgcgatcaagaaagtggaagacatgagcttta |
28184238 |
T |
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| Q |
201 |
agatctcaatagcctcgtttgtttttctagaagaaatcaaacccaaagagttaacgtcttggttgtgttgctcagcactttgcacatgggtggtgac |
297 |
Q |
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| T |
28184239 |
agatctcaatagcctcgtttgtttttctagaagaaatcaaacccaaagagttaacgtcttggttgtgttgctcagcactttgcacatgggtggtgac |
28184335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 42609660 - 42609721
Alignment:
| Q |
236 |
atcaaacccaaagagttaacgtcttggttgtgttgctcagcactttgcacatgggtggtgac |
297 |
Q |
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| T |
42609660 |
atcaagcctaaagagttaacatcttggttatgttgttcagcactttggacatgagtggtgac |
42609721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 42609438 - 42609542
Alignment:
| Q |
14 |
acaactttgagcaaatctttctcgcaaaatcttgaaggatgaagttctccattgacaccggttgtgagtgttctcttagcaacttggcttacagtgttct |
113 |
Q |
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| T |
42609438 |
acaacattgagtaaatccttctcacaaaaccttgatggatgcaactcaccattgacaccaactgttagaattctcttggctacttgacttacagtgttct |
42609537 |
T |
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| Q |
114 |
tgaca |
118 |
Q |
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||||| |
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| T |
42609538 |
tgaca |
42609542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 29 - 291
Target Start/End: Complemental strand, 40945352 - 40945090
Alignment:
| Q |
29 |
tctttctcgcaaaatcttgaaggatgaagttctccattgacaccggttgtgagtgttctcttagcaacttggcttacagtgttcttgacagtgttcctca |
128 |
Q |
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| T |
40945352 |
tctttttcacaaaatcttgaaggatgaagttctccattcacgcctatggtaagggtctttttggcgacttgacttacggtgttcttgactgagtttttca |
40945253 |
T |
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| Q |
129 |
aattctcttccaaatgcctcaagtcaattgcttggcaaagcgcgatcaagaaagtggaagacatgagctttaagatctcaatagcctcgtttgtttttct |
228 |
Q |
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| T |
40945252 |
agttctcctccaaatgtcttaaatcaattgcttggcaaagagcaatcaagaatgtggaagacatgagttgaaggatctcaatggcttcatatgtttttct |
40945153 |
T |
|
| Q |
229 |
agaagaaatcaaacccaaagagttaacgtcttggttgtgttgctcagcactttgcacatgggt |
291 |
Q |
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| T |
40945152 |
cgaagaaatcaaacccaaagagttcacatcttggttgtgctgctcggcactttggacgtgggt |
40945090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 41 - 291
Target Start/End: Complemental strand, 40959305 - 40959055
Alignment:
| Q |
41 |
aatcttgaaggatgaagttctccattgacaccggttgtgagtgttctcttagcaacttggcttacagtgttcttgacagtgttcctcaaattctcttcca |
140 |
Q |
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||||||||||| |||||||||||||| || || | || || || | || || ||||| ||||| ||||||||||| | ||| |||| ||||| |||| |
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| T |
40959305 |
aatcttgaaggttgaagttctccatttactcctatggtaagggtctttttggctacttgacttacggtgttcttgactgagtttttcaagttctcctcca |
40959206 |
T |
|
| Q |
141 |
aatgcctcaagtcaattgcttggcaaagcgcgatcaagaaagtggaagacatgagctttaagatctcaatagcctcgtttgtttttctagaagaaatcaa |
240 |
Q |
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|||| || || ||||||||||||||||| || |||||||| |||||||||||||| | | ||||||||| || || | ||||||||| || |||||||| |
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| T |
40959205 |
aatgtcttaaatcaattgcttggcaaagtgcaatcaagaatgtggaagacatgagttgaaggatctcaatggcttcatatgtttttcttgatgaaatcaa |
40959106 |
T |
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| Q |
241 |
acccaaagagttaacgtcttggttgtgttgctcagcactttgcacatgggt |
291 |
Q |
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|||||||||||| || ||||||||||| ||||| |||||||| || ||||| |
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| T |
40959105 |
acccaaagagttcacatcttggttgtgctgctcggcactttggacgtgggt |
40959055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 100 - 288
Target Start/End: Complemental strand, 43217028 - 43216840
Alignment:
| Q |
100 |
gcttacagtgttcttgacagtgttcctcaaattctcttccaaatgcctcaagtcaattgcttggcaaagcgcgatcaagaaagtggaagacatgagcttt |
199 |
Q |
| |
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||||||||| |||||||||| |||| | ||| | || |||||||||||||||||||| |||||||| || || | ||| | ||||||||||||||||| |
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| T |
43217028 |
gcttacagttttcttgacagagttcttgaaaatttcctccaaatgcctcaagtcaatagcttggcagagtgcaaccaaatatgtggaagacatgagcttc |
43216929 |
T |
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| Q |
200 |
aagatctcaatagcctcgtttgtttttctagaagaaatcaaacccaaagagttaacgtcttggttgtgttgctcagcactttgcacatg |
288 |
Q |
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|| |||||||| || || |||||| ||| ||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||| |
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| T |
43216928 |
aatatctcaatggcttccactgttttcatagcagaaatcaaccccaaagagttcacatcttggttgtgctgctcagcactttgcacatg |
43216840 |
T |
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