View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512_low_3 (Length: 575)
Name: NF4512_low_3
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_low_3 |
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| [»] scaffold0198 (3 HSPs) |
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Alignment Details
Target: scaffold0198 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 302 - 566
Target Start/End: Original strand, 20083 - 20345
Alignment:
| Q |
302 |
tcttaagtcaacagtcaattgttttttattagataaactttatcataaacaaataaacaaatactccatatacactcatttttaattgttggtttaaagt |
401 |
Q |
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| T |
20083 |
tcttaagtcagcagtcaattgttttttattagataaactttatcataaacaaataaacaaatactccatatacactcatttttaattgttggtttaaagt |
20182 |
T |
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| Q |
402 |
tattatttacacataccttctcaaaaaata-ttatttacacatactaaaataattaaataagtttgattacttttgatagcattatttgtcttgtgtgag |
500 |
Q |
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| T |
20183 |
tatt---tacacatcccttctcaaaaaaaggttatttacacatactaaaataattaaataagtttgattacttttgatagcattatttgtcttgtgtgag |
20279 |
T |
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| Q |
501 |
aggaatagaattatttgtcttctttctattatatttagaattctttgttatagtttctagtattat |
566 |
Q |
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| T |
20280 |
aggaatataattatttgtcttctttctattatatttagaattttttgtttttgtttctagtattat |
20345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0198; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 108 - 227
Target Start/End: Original strand, 19886 - 20005
Alignment:
| Q |
108 |
atggcaaagaaaaaacttacttaaatcattcgtaaacatcaaccatatattacatgataagaataaaggattatatatttattgatatggaagatatcgt |
207 |
Q |
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| T |
19886 |
atggcaaagaaaaaacttacttaaatcattcgtaaacatcaaccatatattacatgataagaataaaggattatatatttattgatatggaagatatcgt |
19985 |
T |
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| Q |
208 |
atactttatataaatgtttg |
227 |
Q |
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| T |
19986 |
atactttatataaatgtttg |
20005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0198; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 223
Target Start/End: Original strand, 14932 - 14991
Alignment:
| Q |
165 |
taagaataaaggatta-tatatttattgatatggaagatatcgtatactttatataaatg |
223 |
Q |
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| T |
14932 |
taagaataaaggattaatatatttattgatatggaaaatttcataaactttttataaatg |
14991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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