View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4512_low_30 (Length: 304)

Name: NF4512_low_30
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4512_low_30
NF4512_low_30
[»] chr2 (22 HSPs)
chr2 (11-301)||(41517390-41517680)
chr2 (193-300)||(43445057-43445164)
chr2 (192-300)||(14725238-14725346)
chr2 (187-278)||(27279487-27279578)
chr2 (188-278)||(9895549-9895638)
chr2 (189-247)||(29168580-29168638)
chr2 (182-247)||(9733474-9733539)
chr2 (182-247)||(30429064-30429129)
chr2 (182-246)||(472407-472471)
chr2 (191-247)||(33956366-33956422)
chr2 (182-245)||(11564996-11565059)
chr2 (178-247)||(41517355-41517424)
chr2 (182-249)||(9733544-9733611)
chr2 (182-229)||(27279578-27279625)
chr2 (229-296)||(33956328-33956395)
chr2 (182-247)||(14725206-14725271)
chr2 (182-235)||(34138787-34138840)
chr2 (251-296)||(36472130-36472175)
chr2 (187-223)||(7645460-7645496)
chr2 (194-246)||(36472106-36472158)
chr2 (189-249)||(41221707-41221767)
chr2 (187-247)||(43445031-43445090)
[»] chr1 (34 HSPs)
chr1 (185-300)||(41944797-41944912)
chr1 (181-295)||(5368806-5368920)
chr1 (196-300)||(8900821-8900925)
chr1 (182-300)||(35489224-35489342)
chr1 (180-278)||(5346955-5347053)
chr1 (188-246)||(14231047-14231105)
chr1 (182-278)||(36618857-36618953)
chr1 (176-247)||(49166688-49166759)
chr1 (189-247)||(24419613-24419671)
chr1 (182-260)||(5700027-5700107)
chr1 (178-247)||(8174175-8174244)
chr1 (179-300)||(24419525-24419646)
chr1 (180-247)||(41944763-41944830)
chr1 (176-222)||(457562-457608)
chr1 (193-243)||(5700118-5700168)
chr1 (192-278)||(37247621-37247707)
chr1 (182-235)||(4604930-4604983)
chr1 (187-247)||(35489197-35489257)
chr1 (189-247)||(1609966-1610024)
chr1 (179-221)||(5368767-5368809)
chr1 (181-247)||(25395997-25396063)
chr1 (184-222)||(30412701-30412739)
chr1 (218-300)||(49166639-49166721)
chr1 (191-247)||(8900798-8900854)
chr1 (179-223)||(38636306-38636350)
chr1 (181-213)||(50692079-50692111)
chr1 (191-242)||(51171260-51171311)
chr1 (181-223)||(38636223-38636265)
chr1 (179-212)||(457687-457720)
chr1 (182-223)||(31032437-31032478)
chr1 (193-226)||(51171357-51171390)
chr1 (198-278)||(11900877-11900957)
chr1 (188-224)||(42074134-42074170)
chr1 (182-222)||(47911954-47911994)
[»] chr4 (24 HSPs)
chr4 (178-300)||(10065093-10065215)
chr4 (191-300)||(52378701-52378810)
chr4 (181-296)||(20783683-20783798)
chr4 (179-247)||(23673436-23673504)
chr4 (190-296)||(6371918-6372024)
chr4 (181-299)||(23673351-23673468)
chr4 (181-278)||(38562175-38562272)
chr4 (180-247)||(52840261-52840328)
chr4 (194-278)||(54918994-54919079)
chr4 (181-247)||(44626477-44626543)
chr4 (193-252)||(20291788-20291847)
chr4 (181-247)||(10065060-10065126)
chr4 (187-253)||(30920709-30920775)
chr4 (182-246)||(39993123-39993187)
chr4 (194-235)||(30920801-30920842)
chr4 (181-246)||(38562120-38562185)
chr4 (188-248)||(20291861-20291921)
chr4 (182-235)||(8679035-8679089)
chr4 (179-229)||(12625202-12625252)
chr4 (178-224)||(16018228-16018274)
chr4 (230-275)||(8678986-8679031)
chr4 (237-278)||(17236167-17236208)
chr4 (182-223)||(27990268-27990309)
chr4 (218-274)||(44626428-44626484)
[»] chr8 (24 HSPs)
chr8 (187-300)||(6590810-6590923)
chr8 (181-300)||(44329151-44329270)
chr8 (198-299)||(6649101-6649202)
chr8 (182-299)||(14113241-14113358)
chr8 (189-300)||(1784091-1784202)
chr8 (192-300)||(42158409-42158520)
chr8 (181-300)||(18147805-18147924)
chr8 (193-260)||(30358648-30358714)
chr8 (187-247)||(6616590-6616650)
chr8 (182-274)||(20694414-20694506)
chr8 (191-278)||(8168956-8169042)
chr8 (188-247)||(14113214-14113273)
chr8 (192-247)||(27988084-27988139)
chr8 (192-247)||(28045386-28045441)
chr8 (181-247)||(1784169-1784235)
chr8 (188-246)||(2602054-2602112)
chr8 (182-247)||(40737902-40737967)
chr8 (189-221)||(14110085-14110117)
chr8 (218-278)||(24185581-24185641)
chr8 (181-296)||(40737816-40737931)
chr8 (181-247)||(24185525-24185592)
chr8 (182-236)||(30857320-30857374)
chr8 (193-246)||(9428142-9428195)
chr8 (179-219)||(6590775-6590815)
[»] chr7 (17 HSPs)
chr7 (194-300)||(34670380-34670485)
chr7 (182-276)||(2399751-2399845)
chr7 (196-299)||(23097511-23097613)
chr7 (189-247)||(2399702-2399760)
chr7 (182-247)||(34670348-34670413)
chr7 (188-247)||(12810388-12810447)
chr7 (194-300)||(12810316-12810421)
chr7 (202-296)||(15996147-15996241)
chr7 (179-249)||(18701016-18701088)
chr7 (182-222)||(35274408-35274448)
chr7 (178-278)||(30005627-30005729)
chr7 (179-221)||(3094441-3094483)
chr7 (189-250)||(45444720-45444782)
chr7 (182-235)||(13468925-13468978)
chr7 (179-224)||(17801370-17801415)
chr7 (218-275)||(36720217-36720274)
chr7 (179-223)||(29229665-29229709)
[»] chr3 (19 HSPs)
chr3 (182-300)||(16867613-16867731)
chr3 (189-296)||(18093780-18093887)
chr3 (185-296)||(29212841-29212952)
chr3 (195-272)||(27696621-27696698)
chr3 (194-247)||(30122035-30122088)
chr3 (182-245)||(19790718-19790781)
chr3 (181-246)||(1779488-1779553)
chr3 (193-260)||(55121241-55121308)
chr3 (182-296)||(19790754-19790868)
chr3 (182-244)||(26331299-26331361)
chr3 (182-260)||(41067721-41067799)
chr3 (201-246)||(49658302-49658347)
chr3 (189-246)||(49733624-49733681)
chr3 (191-247)||(18093858-18093914)
chr3 (192-247)||(46360480-46360535)
chr3 (191-247)||(29212923-29212979)
chr3 (180-224)||(38603072-38603116)
chr3 (191-235)||(40793576-40793620)
chr3 (185-213)||(50561176-50561204)
[»] chr5 (30 HSPs)
chr5 (182-300)||(14509848-14509966)
chr5 (182-301)||(5865867-5865986)
chr5 (193-296)||(8567907-8568010)
chr5 (180-299)||(28499775-28499894)
chr5 (189-276)||(30046358-30046445)
chr5 (187-300)||(19522545-19522658)
chr5 (194-278)||(8355556-8355640)
chr5 (179-259)||(43221629-43221709)
chr5 (193-260)||(7065652-7065719)
chr5 (192-275)||(11089345-11089428)
chr5 (182-300)||(14751122-14751238)
chr5 (182-235)||(14751217-14751270)
chr5 (194-253)||(18200668-18200727)
chr5 (188-278)||(10244042-10244132)
chr5 (187-245)||(35458208-35458266)
chr5 (182-235)||(16829198-16829250)
chr5 (185-270)||(28351002-28351086)
chr5 (189-246)||(28499863-28499919)
chr5 (189-278)||(31146675-31146764)
chr5 (179-252)||(32522603-32522676)
chr5 (189-260)||(32741379-32741450)
chr5 (181-246)||(6266219-6266285)
chr5 (181-214)||(8850258-8850291)
chr5 (190-223)||(15474420-15474453)
chr5 (191-240)||(35458130-35458179)
chr5 (185-246)||(38699044-38699105)
chr5 (186-223)||(40773076-40773113)
chr5 (195-246)||(14509828-14509880)
chr5 (178-247)||(30046296-30046367)
chr5 (181-209)||(34255285-34255313)
[»] scaffold0514 (1 HSPs)
scaffold0514 (194-299)||(5827-5932)
[»] chr6 (15 HSPs)
chr6 (187-278)||(16260672-16260763)
chr6 (180-278)||(862815-862913)
chr6 (181-247)||(24252961-24253027)
chr6 (182-278)||(9910544-9910640)
chr6 (185-299)||(24252883-24252993)
chr6 (194-276)||(5069947-5070029)
chr6 (182-246)||(3846426-3846490)
chr6 (196-296)||(31159086-31159186)
chr6 (178-223)||(674154-674199)
chr6 (194-278)||(26296258-26296342)
chr6 (189-223)||(2271229-2271263)
chr6 (181-223)||(4143773-4143815)
chr6 (182-247)||(862902-862966)
chr6 (181-246)||(9605361-9605426)
chr6 (179-223)||(3633714-3633758)
[»] scaffold0470 (1 HSPs)
scaffold0470 (187-247)||(5876-5936)


Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 11 - 301
Target Start/End: Complemental strand, 41517680 - 41517390
Alignment:
Q  11 cacagagcaaagaagaagttaatctaaactgaagaaaatcacctcagcatcagcataggttgattgccttctgatactgcaacgaggatacttcacaact 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41517680 cacagagcaaagaagaagttaatctaaactgaagaaaatcacctcagcatcagcataggttgattgccttctgatactgcaacgaggatacttcacaact 41517581  T
Q  111 gacttggaaccataccacttaagcttcaactgttaccataatatgagtaacataagattaagatcagtatatacttcctccggtcacatttataagcaaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41517580 gacttggaaccataccacttaagcttcaactgttaccataatatgagtaacataagattaagatcagtatatactccctccggtcacatttataagcaaa 41517481  T
Q  211 aaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttggatatacctaaaaagttgg 301  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  41517480 aaataactttttaagtacattgaataattaatgtatccgatcacatttatgggttagatacattaattcttggatgtacctaaaaagttgg 41517390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 193 - 300
Target Start/End: Complemental strand, 43445164 - 43445057
Alignment:
Q  193 gtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttggatataccta 292  Q
    ||||||||| |||||||||||| | |||||| ||| ||||||| ||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||    
T  43445164 gtcacatttgtaagcaaaaaatgattttttatgtacattgaataattaatgtatccggtcacatttatgggttagatacattaattattgaatataccta 43445065  T
Q  293 aaaagttg 300  Q
    ||||||||    
T  43445064 aaaagttg 43445057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 300
Target Start/End: Complemental strand, 14725346 - 14725238
Alignment:
Q  192 ggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttggatatacct 291  Q
    |||||| | ||||| |||||||||| ||||||  || ||||||| ||||||||||||||||| ||||||| |||||||||||||||| || ||| || ||    
T  14725346 ggtcacgtatataaacaaaaaataattttttatatacattgaataattaatgtatccgatcagatttatgagttagatacattaattattagatgtatct 14725247  T
Q  292 aaaaagttg 300  Q
    |||||||||    
T  14725246 aaaaagttg 14725238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 187 - 278
Target Start/End: Original strand, 27279487 - 27279578
Alignment:
Q  187 cctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaatt 278  Q
    |||||||||||||||||||||||||||||| |||||| ||  ||||||| | ||||||||||||||| | |||| ||| |||||||||||||    
T  27279487 cctccggtcacatttataagcaaaaaataattttttaggttcattgaataactaatgtatccgatcataattataggtcagatacattaatt 27279578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 278
Target Start/End: Original strand, 9895549 - 9895638
Alignment:
Q  188 ctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaatt 278  Q
    |||||||||||||||||| |||||||||| | ||||  || ||||||| |||||||||||   |||||||||| |||||||||||||||||    
T  9895549 ctccggtcacatttataaacaaaaaataattctttagttacattgaat-attaatgtatctagtcacatttataggttagatacattaatt 9895638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 29168638 - 29168580
Alignment:
Q  189 tccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||||||||||||||||||||||||||||||||||| || ||| ||| |||||||||||    
T  29168638 tccggtcacatttataagcaaaaaataactttttaaatacattaaataattaatgtatc 29168580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 9733474 - 9733539
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||| ||||||||||||||||||||||||||| || |||||| ||  |||| ||||||||||||||    
T  9733474 tactccctccggtcacatttataagcaaaaaacaattttttaggtgcattggatgattaatgtatc 9733539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 30429064 - 30429129
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||| ||||||||||||||||||||||||||| ||||||||| ||  ||| ||| |||||||||||    
T  30429064 tactccctccggtcacatttataagcaaaaaacaactttttaggttcattcaataattaatgtatc 30429129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 472407 - 472471
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtat 246  Q
    |||| ||||||||||||||||||| ||||| ||||||||||| || |||||||| | ||||||||    
T  472407 tactccctccggtcacatttataaacaaaatataactttttaggtttattgaataactaatgtat 472471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 33956422 - 33956366
Alignment:
Q  191 cggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||||||||||||||| ||||||||| ||||||  |||||||||| |||||||||||    
T  33956422 cggtcacatttataagaaaaaaataaatttttagatatattgaataattaatgtatc 33956366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 11564996 - 11565059
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgta 245  Q
    |||| ||||||||||||||||||||||||||| ||| |||||  || ||||||| |||||||||    
T  11564996 tactccctccggtcacatttataagcaaaaaacaacattttagatacattgaataattaatgta 11565059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 41517355 - 41517424
Alignment:
Q  178 tatatacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||||||| ||||||||||||||||||||||||||  ||||||||| ||| ||  ||  |||||||||||    
T  41517355 tatatactccctccggtcacatttataagcaaaaaccaactttttaggtacatccaagaattaatgtatc 41517424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 9733611 - 9733544
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccg 249  Q
    |||| ||||||||||||||||||| ||||||| || |||||| ||  ||||||| | |||||||||||    
T  9733611 tactccctccggtcacatttataaacaaaaaacaattttttaggttcattgaataactaatgtatccg 9733544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 27279625 - 27279578
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtata 229  Q
    |||| ||| |||||| |||||||||||||||| |||||||||||||||    
T  27279625 tactcccttcggtcatatttataagcaaaaaacaactttttaagtata 27279578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 33956328 - 33956395
Alignment:
Q  229 attgaatgattaatgtatccgatcacatttatgggttagatacattaattcttggatatacctaaaaa 296  Q
    ||||||| ||||||||||||| ||| ||||||  |||||||||||||||| ||  ||||| |||||||    
T  33956328 attgaataattaatgtatccggtcatatttataagttagatacattaattattcaatatatctaaaaa 33956395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 14725206 - 14725271
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    ||||||||||||||| |||||||| ||||||| |||||||||  || ||  ||| |||||||||||    
T  14725206 tacttcctccggtcatatttataaacaaaaaacaactttttagatacatctaataattaatgtatc 14725271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 34138840 - 34138787
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaat 235  Q
    ||||||||||| |||||||||||| ||||||| || |||||| || ||||||||    
T  34138840 tacttcctccgatcacatttataaacaaaaaacaattttttaggtttattgaat 34138787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 296
Target Start/End: Complemental strand, 36472175 - 36472130
Alignment:
Q  251 tcacatttatgggttagatacattaattcttggatatacctaaaaa 296  Q
    |||||||||||||||| ||||||||||| |||||| ||| ||||||    
T  36472175 tcacatttatgggttatatacattaattattggatgtacttaaaaa 36472130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 7645460 - 7645496
Alignment:
Q  187 cctccggtcacatttataagcaaaaaataacttttta 223  Q
    |||||||||||||||||||||||||||  ||||||||    
T  7645460 cctccggtcacatttataagcaaaaaaagacttttta 7645496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 36472106 - 36472158
Alignment:
Q  194 tcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtat 246  Q
    |||||||||| |||||||||||| |||||||||| ||  ||| ||||||||||    
T  36472106 tcacatttatgagcaaaaaataattttttaagtacatccaataattaatgtat 36472158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 41221767 - 41221707
Alignment:
Q  189 tccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccg 249  Q
    |||||||| ||||||||| ||||||||| |||||| ||  ||||||| | |||||||||||    
T  41221767 tccggtcatatttataagtaaaaaataaatttttaggttcattgaataactaatgtatccg 41221707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 43445031 - 43445090
Alignment:
Q  187 cctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||||||| |||| ||||||||||||  ||||||||| ||||||| ||| |||||||||||    
T  43445031 cctccggttacatctataagcaaaaac-aactttttaggtatattcaataattaatgtatc 43445090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 185 - 300
Target Start/End: Complemental strand, 41944912 - 41944797
Alignment:
Q  185 ttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttgga 284  Q
    ||||||||| |||||||||||||||| ||| | |||||||||| | ||||| ||||||||| ||| |||||||||||||||||||||||||||| |||||    
T  41944912 ttcctccggccacatttataagcaaataatgattttttaagtacaatgaataattaatgtacccggtcacatttatgggttagatacattaattattgga 41944813  T
Q  285 tatacctaaaaagttg 300  Q
    ||||||||||||||||    
T  41944812 tatacctaaaaagttg 41944797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 181 - 295
Target Start/End: Complemental strand, 5368920 - 5368806
Alignment:
Q  181 atacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattct 280  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||  |  ||||||| ||||||||||||| |||||||||||||||||||||||||||| |    
T  5368920 atactccctccggtcatatttataagcaaaaattaactttttagatgcattgaataattaatgtatccggtcacatttatgggttagatacattaattat 5368821  T
Q  281 tggatatacctaaaa 295  Q
    ||||| ||| |||||    
T  5368820 tggatgtacataaaa 5368806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 8900925 - 8900821
Alignment:
Q  196 acatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttggatatacctaaaa 295  Q
    ||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||| |||||||||| ||||||||||||||||| ||  || |||||||||    
T  8900925 acatttataagtaaaaaattactttttaggtatattgaataattaatgtatccggtcacatttataggttagatacattaattattcaatgtacctaaaa 8900826  T
Q  296 agttg 300  Q
    |||||    
T  8900825 agttg 8900821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 300
Target Start/End: Complemental strand, 35489342 - 35489224
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattctt 281  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||||| ||| | | | |||||| ||||||||||||||||| ||    
T  35489342 tactccctccggtcacatttataagcaaaaaatgactttttatgtacattgaataattaatgaatctggtgatatttataggttagatacattaattatt 35489243  T
Q  282 ggatatacctaaaaagttg 300  Q
      || || |||||||||||    
T  35489242 caatgtatctaaaaagttg 35489224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 180 - 278
Target Start/End: Original strand, 5346955 - 5347053
Alignment:
Q  180 tatacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaatt 278  Q
    ||||||||||| |||||||||||||||||||||||  |||||||  || ||||||| ||||||||||||  ||||||||||   ||||||| |||||||    
T  5346955 tatacttcctctggtcacatttataagcaaaaaatgtctttttagatacattgaataattaatgtatccattcacatttatatattagatatattaatt 5347053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 14231047 - 14231105
Alignment:
Q  188 ctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtat 246  Q
    |||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||    
T  14231047 ctccggtcacatttataagcaaaaaataactttttacgttcattgaatgattaatgtat 14231105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 278
Target Start/End: Complemental strand, 36618953 - 36618857
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaatt 278  Q
    ||||||||||||||| ||||||||| |||||| || ||||||| || ||||||| |||||||||| | |||||||||||  || |||||| ||||||    
T  36618953 tacttcctccggtcatatttataagtaaaaaacaattttttaactacattgaataattaatgtattcaatcacatttataagtcagatacgttaatt 36618857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 49166759 - 49166688
Alignment:
Q  176 agtatatacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||||||||| |||| |||||||||||||||||||||| |||||||||  || ||||||| |||||||||||    
T  49166759 agtatatactccctctggtcacatttataagcaaaaaacaactttttagttacattgaataattaatgtatc 49166688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 24419671 - 24419613
Alignment:
Q  189 tccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    ||||||||||||||||||||||||| ||||||||| ||| ||||||| |||||||||||    
T  24419671 tccggtcacatttataagcaaaaaacaactttttaggtacattgaataattaatgtatc 24419613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 260
Target Start/End: Original strand, 5700027 - 5700107
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaa--gtatattgaatgattaatgtatccgatcacatttat 260  Q
    |||| |||||| ||| |||||||||||||||||| ||||||||   |||||||||| ||||||||||||||||| ||||||    
T  5700027 tactacctccgatcatatttataagcaaaaaatagctttttaattatatattgaataattaatgtatccgatcatatttat 5700107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 8174244 - 8174175
Alignment:
Q  178 tatatacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||||||| ||||||||||||||||||||||||| | |||||||||  |  |||||||||||||||||||    
T  8174244 tatatactccctccggtcacatttataagcaaaacacaactttttatattcattgaatgattaatgtatc 8174175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 179 - 300
Target Start/End: Original strand, 24419525 - 24419646
Alignment:
Q  179 atatacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaatt 278  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||  |  ||||||  | ||||||||||  ||| | ||||  || |||||||||||||    
T  24419525 atatactccctccggtcacatttataagcaaaaaagaactttttagattcattgaagaactaatgtatccagtcataattataagtcagatacattaatt 24419624  T
Q  279 cttggatatacctaaaaagttg 300  Q
     ||  || ||||||||||||||    
T  24419625 attcaatgtacctaaaaagttg 24419646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 41944763 - 41944830
Alignment:
Q  180 tatacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||||| ||| ||||||||||||||||||||||| ||||||||| ||||||  ||| |||||||||||    
T  41944763 tatactcccttcggtcacatttataagcaaaaaacaactttttaggtatatccaataattaatgtatc 41944830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 457562 - 457608
Alignment:
Q  176 agtatatacttcctccggtcacatttataagcaaaaaataacttttt 222  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||    
T  457562 agtatatactccctccggtcacatttataagcaaaaaatcacttttt 457608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 193 - 243
Target Start/End: Complemental strand, 5700168 - 5700118
Alignment:
Q  193 gtcacatttataagcaaaaaataactttttaagtatattgaatgattaatg 243  Q
    ||||||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  5700168 gtcacatttataagcaaaaaacaactttttaagtacattgaataattaatg 5700118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 278
Target Start/End: Complemental strand, 37247707 - 37247621
Alignment:
Q  192 ggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaatt 278  Q
    ||||||||||||||| ||||||||||||||||| || ||| ||| |||||  ||| |  | |||||||| |||||||||||||||||    
T  37247707 ggtcacatttataagtaaaaaataactttttaaatacatttaataattaacatatacagttacatttataggttagatacattaatt 37247621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 4604983 - 4604930
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaat 235  Q
    |||||||| |||||||||||||||||||||||| |||||||| || ||||||||    
T  4604983 tacttccttcggtcacatttataagcaaaaaatcactttttaggtttattgaat 4604930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 247
Target Start/End: Original strand, 35489197 - 35489257
Alignment:
Q  187 cctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    ||||||||||||||||||| ||||||| |||||||||  || ||||||| |||||||||||    
T  35489197 cctccggtcacatttataatcaaaaaacaactttttagatacattgaataattaatgtatc 35489257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 1609966 - 1610024
Alignment:
Q  189 tccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||| |||||||||||||||||||| |||||||||  || ||||||| |||||||||||    
T  1609966 tccgatcacatttataagcaaaaaacaactttttagatacattgaataattaatgtatc 1610024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 5368767 - 5368809
Alignment:
Q  179 atatacttcctccggtcacatttataagcaaaaaataactttt 221  Q
    ||||||| |||||| ||||||||||||||||||||||||||||    
T  5368767 atatactccctccgatcacatttataagcaaaaaataactttt 5368809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 25396063 - 25395997
Alignment:
Q  181 atacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    ||||| |||||||||| |||||||||||||||| ||  ||||| ||||||||| | |||||||||||    
T  25396063 atactccctccggtcatatttataagcaaaaaacaatgttttaggtatattgagtcattaatgtatc 25395997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 30412739 - 30412701
Alignment:
Q  184 cttcctccggtcacatttataagcaaaaaataacttttt 222  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  30412739 cttcctccggtcacatttataagcaaaaaatcacttttt 30412701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 300
Target Start/End: Original strand, 49166639 - 49166721
Alignment:
Q  218 tttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttggatatacctaaaaagttg 300  Q
    |||||| ||| ||| ||| ||||||||||||  |||||||||| ||||||||||||||||| ||  || || |||||||||||    
T  49166639 tttttaggtacattaaataattaatgtatccagtcacatttataggttagatacattaattattcaatgtaactaaaaagttg 49166721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Original strand, 8900798 - 8900854
Alignment:
Q  191 cggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||||||||||||||| || ||| ||||||||| ||| ||||||| |||||||||||    
T  8900798 cggtcacatttataagtaataaacaactttttaggtacattgaataattaatgtatc 8900854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 38636350 - 38636306
Alignment:
Q  179 atatacttcctccggtcacatttataagcaaaaaataacttttta 223  Q
    ||||||| |||||||||||||||| |||||||||| |||||||||    
T  38636350 atatactccctccggtcacatttaaaagcaaaaaacaacttttta 38636306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 50692079 - 50692111
Alignment:
Q  181 atacttcctccggtcacatttataagcaaaaaa 213  Q
    |||||||||||||||||||||||||||||||||    
T  50692079 atacttcctccggtcacatttataagcaaaaaa 50692111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 51171260 - 51171311
Alignment:
Q  191 cggtcacatttataagcaaaaaataactttttaagtatattgaatgattaat 242  Q
    |||||| |||||||||||||||| ||||||||| |||||||| || ||||||    
T  51171260 cggtcatatttataagcaaaaaacaactttttaggtatattgtataattaat 51171311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 38636223 - 38636265
Alignment:
Q  181 atacttcctccggtcacatttataagcaaaaaataacttttta 223  Q
    ||||| ||||| ||||||||||||||||||||| |||||||||    
T  38636223 atactccctcctgtcacatttataagcaaaaaacaacttttta 38636265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 212
Target Start/End: Complemental strand, 457720 - 457687
Alignment:
Q  179 atatacttcctccggtcacatttataagcaaaaa 212  Q
    ||||||| ||||||||||||||||||||||||||    
T  457720 atatactccctccggtcacatttataagcaaaaa 457687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 31032437 - 31032478
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataacttttta 223  Q
    |||| |||||||||||||| |||||||||||| |||||||||    
T  31032437 tactccctccggtcacattaataagcaaaaaacaacttttta 31032478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 51171390 - 51171357
Alignment:
Q  193 gtcacatttataagcaaaaaataactttttaagt 226  Q
    |||||||||||||| |||||||||||||||||||    
T  51171390 gtcacatttataagtaaaaaataactttttaagt 51171357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 11900957 - 11900877
Alignment:
Q  198 atttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaatt 278  Q
    |||||||| ||||||  |||||||||  || ||||||| |||||| |||| | |||||||||| ||| | |||||||||||    
T  11900957 atttataaacaaaaaccaactttttagatacattgaataattaatatatctggtcacatttataggtcaaatacattaatt 11900877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 42074134 - 42074170
Alignment:
Q  188 ctccggtcacatttataagcaaaaaataactttttaa 224  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  42074134 ctccggtcatatttataagcaaaaaattactttttaa 42074170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 47911994 - 47911954
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataacttttt 222  Q
    |||| |||||||||| ||||||||||||||||| |||||||    
T  47911994 tactccctccggtcatatttataagcaaaaaatcacttttt 47911954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 178 - 300
Target Start/End: Complemental strand, 10065215 - 10065093
Alignment:
Q  178 tatatacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaat 277  Q
    |||||||| | ||| ||| |||||||||||||||||| |||||||| ||| ||||||| |||||||||||||| || ||||||| |||||||||||||||    
T  10065215 tatatactccatccagtcgcatttataagcaaaaaatgactttttaggtacattgaataattaatgtatccgaccatatttatgagttagatacattaat 10065116  T
Q  278 tcttggatatacctaaaaagttg 300  Q
    | |||||| ||||||||||||||    
T  10065115 tattggatgtacctaaaaagttg 10065093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 191 - 300
Target Start/End: Complemental strand, 52378810 - 52378701
Alignment:
Q  191 cggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttggatatacc 290  Q
    |||||| ||||||||||||||||| ||| ||||  |||||||||| ||||||||||  ||||||||||||| |||||||||||||||| ||||||||| |    
T  52378810 cggtcatatttataagcaaaaaatgactctttagatatattgaataattaatgtatttgatcacatttatgagttagatacattaattattggatatatc 52378711  T
Q  291 taaaaagttg 300  Q
    ||||||||||    
T  52378710 taaaaagttg 52378701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 181 - 296
Target Start/End: Original strand, 20783683 - 20783798
Alignment:
Q  181 atacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattct 280  Q
    |||||| ||||  ||||||||||||  ||||||| |||||||||||| ||||||| ||||||||||| |||||||||||||  ||| ||||||||||| |    
T  20783683 atactttctccaatcacatttataaataaaaaatgactttttaagtacattgaataattaatgtatctgatcacatttatgtattaaatacattaattat 20783782  T
Q  281 tggatatacctaaaaa 296  Q
    ||||| ||||||||||    
T  20783783 tggatgtacctaaaaa 20783798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 247
Target Start/End: Complemental strand, 23673504 - 23673436
Alignment:
Q  179 atatacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  23673504 atatacctcctccagtcacatttataagcaaaaaataactttttaggtatattgaataattaatgtatc 23673436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 190 - 296
Target Start/End: Original strand, 6371918 - 6372024
Alignment:
Q  190 ccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttggatatac 289  Q
    |||||| |||||||||||||||||| |||||||| ||| ||||||| ||||||||||  | | ||||||||||||||||||||||| || ||  || |||    
T  6371918 ccggtcccatttataagcaaaaaatgactttttaggtacattgaataattaatgtatatggttacatttatgggttagatacattagttattaaatgtac 6372017  T
Q  290 ctaaaaa 296  Q
    |||||||    
T  6372018 ctaaaaa 6372024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 299
Target Start/End: Original strand, 23673351 - 23673468
Alignment:
Q  181 atacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattct 280  Q
    ||||||| ||||||| |||||||||||||||||||||||||||| || || |||| ||||||||||  | |||||| |||  || ||||||||||||| |    
T  23673351 atacttcatccggtcgcatttataagcaaaaaataactttttaa-tacatcgaataattaatgtatttggtcacatatatatgtcagatacattaattat 23673449  T
Q  281 tggatatacctaaaaagtt 299  Q
    |  ||||||||||||||||    
T  23673450 tcaatatacctaaaaagtt 23673468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 278
Target Start/End: Complemental strand, 38562272 - 38562175
Alignment:
Q  181 atacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaatt 278  Q
    ||||| ||||||||||||||||||||||||||| || ||||||  || ||||||| ||||||||||||| |||||||||| ||  | |||||||||||    
T  38562272 atactccctccggtcacatttataagcaaaaaacaattttttagatacattgaataattaatgtatccggtcacatttataggacatatacattaatt 38562175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 52840261 - 52840328
Alignment:
Q  180 tatacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||    
T  52840261 tatactccctccggtcacatttataagcaaaaaataattttttaagtacattaaataattaatgtatc 52840328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 278
Target Start/End: Complemental strand, 54919079 - 54918994
Alignment:
Q  194 tcacatttataagcaaaaaa-taactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaatt 278  Q
    ||||||||||||| |||||| | |||||||||||| ||||||| | ||||||||||| |||| ||||| |||||||||||||||||    
T  54919079 tcacatttataagtaaaaaaatgactttttaagtacattgaataactaatgtatccggtcacgtttataggttagatacattaatt 54918994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 44626543 - 44626477
Alignment:
Q  181 atacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    ||||| ||||||||||||| |||||||||||||| ||||||||| |||||||||| || ||||||||    
T  44626543 atactccctccggtcacatatataagcaaaaaatgactttttaaatatattgaataatcaatgtatc 44626477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 20291788 - 20291847
Alignment:
Q  193 gtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatc 252  Q
    ||||||||||||||||||||| ||||||||||||||||| ||| | ||||||||| ||||    
T  20291788 gtcacatttataagcaaaaaacaactttttaagtatattaaataactaatgtatctgatc 20291847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 10065060 - 10065126
Alignment:
Q  181 atacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    ||||| ||||||||||||||||||||||||||| ||||||||| ||| ||  ||| |||||||||||    
T  10065060 atactccctccggtcacatttataagcaaaaaacaactttttaggtacatccaataattaatgtatc 10065126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 30920709 - 30920775
Alignment:
Q  187 cctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatca 253  Q
    ||||||||||| |||||||  | |||| |||||||||||| |||||||| |||||||||||||||||    
T  30920709 cctccggtcacttttataaatataaaacaactttttaagtttattgaataattaatgtatccgatca 30920775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 39993187 - 39993123
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtat 246  Q
    ||||| ||||||||||||||||||| ||||||||||||||||  |  ||||||| ||||||||||    
T  39993187 tactttctccggtcacatttataagtaaaaaataactttttagattcattgaataattaatgtat 39993123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 30920842 - 30920801
Alignment:
Q  194 tcacatttataagcaaaaaataactttttaagtatattgaat 235  Q
    ||||||||||||||||||||||| ||||||||| ||||||||    
T  30920842 tcacatttataagcaaaaaataattttttaagtttattgaat 30920801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 38562120 - 38562185
Alignment:
Q  181 atacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtat 246  Q
    ||||| ||| ||||||||||||||||||||||| ||||| |||  || ||||||| ||||||||||    
T  38562120 atactcccttcggtcacatttataagcaaaaaacaacttgttagatacattgaataattaatgtat 38562185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 248
Target Start/End: Complemental strand, 20291921 - 20291861
Alignment:
Q  188 ctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatcc 248  Q
    ||||| ||| ||||||||||||||||||||||||||  | |||||||| | ||||||||||    
T  20291921 ctccgatcatatttataagcaaaaaataactttttagatttattgaataactaatgtatcc 20291861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 8679089 - 8679035
Alignment:
Q  182 tacttcctccggtcacatttataagcaa-aaaataactttttaagtatattgaat 235  Q
    |||| ||||||||||||||||||||||| ||||||| |||||| ||| |||||||    
T  8679089 tactccctccggtcacatttataagcaaaaaaataattttttaggtacattgaat 8679035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 12625202 - 12625252
Alignment:
Q  179 atatacttcctccggtcacatttataagcaaaaaataactttttaagtata 229  Q
    ||||||||| |||| ||| ||||||||| ||||||||| ||||||||||||    
T  12625202 atatacttcttccgttcatatttataagtaaaaaataattttttaagtata 12625252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 224
Target Start/End: Complemental strand, 16018274 - 16018228
Alignment:
Q  178 tatatacttcctccggtcacatttataagcaaaaaataactttttaa 224  Q
    |||||||| ||||| ||||||||||||||||||||| || |||||||    
T  16018274 tatatactccctcccgtcacatttataagcaaaaaacaattttttaa 16018228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 8678986 - 8679031
Alignment:
Q  230 ttgaatgattaatgtatccgatcacatttatgggttagatacatta 275  Q
    |||||| ||||||||||||| ||||||||||  |||||||||||||    
T  8678986 ttgaataattaatgtatccggtcacatttatatgttagatacatta 8679031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 278
Target Start/End: Original strand, 17236167 - 17236208
Alignment:
Q  237 attaatgtatccgatcacatttatgggttagatacattaatt 278  Q
    ||||||||||||| |||||||||| ||||| |||||||||||    
T  17236167 attaatgtatccggtcacatttataggttaaatacattaatt 17236208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 27990268 - 27990309
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataacttttta 223  Q
    |||||||||| |||||||||||||||||||||| | ||||||    
T  27990268 tacttcctcccgtcacatttataagcaaaaaattagttttta 27990309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 44626428 - 44626484
Alignment:
Q  218 tttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacatt 274  Q
    |||||||||||||||||| |||||| |||  | ||||||| || |||||||||||||    
T  44626428 tttttaagtatattgaataattaatttatgtggtcacattcataggttagatacatt 44626484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 187 - 300
Target Start/End: Complemental strand, 6590923 - 6590810
Alignment:
Q  187 cctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttggata 286  Q
    |||| ||||||||||||||||||||||| |||||||| ||| ||||||| ||||||||||||| ||| |||||||||||||||||||| ||| ||||||     
T  6590923 cctctggtcacatttataagcaaaaaattactttttaggtacattgaataattaatgtatccggtcatatttatgggttagatacattgattattggatg 6590824  T
Q  287 tacctaaaaagttg 300  Q
    ||||||| ||||||    
T  6590823 tacctaagaagttg 6590810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 181 - 300
Target Start/End: Original strand, 44329151 - 44329270
Alignment:
Q  181 atacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattct 280  Q
    ||||| ||||| |||||| ||||||||||||||| | ||||||| || ||||||| ||||||||||  | |||||||||||||||||||||||||||| |    
T  44329151 atactccctccagtcacaattataagcaaaaaatgattttttaaatacattgaataattaatgtatttggtcacatttatgggttagatacattaattat 44329250  T
Q  281 tggatatacctaaaaagttg 300  Q
    ||||| ||||||||||||||    
T  44329251 tggatgtacctaaaaagttg 44329270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 6649202 - 6649101
Alignment:
Q  198 atttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttggatatacctaaaaag 297  Q
    ||||||||||||||||| |||||||| ||| ||||||| ||||||||||||| ||| ||| |||||||||||||||| ||| |||||| |||||||||||    
T  6649202 atttataagcaaaaaatgactttttaggtacattgaataattaatgtatccggtcatattcatgggttagatacattgattattggatgtacctaaaaag 6649103  T
Q  298 tt 299  Q
    ||    
T  6649102 tt 6649101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 182 - 299
Target Start/End: Complemental strand, 14113358 - 14113241
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattctt 281  Q
    |||| ||| |||||| |||| |||| ||||||| ||||||||  || ||||||| |||||||||| || |||||||||||||||||||||||||||| ||    
T  14113358 tactcccttcggtcatatttctaagtaaaaaatgactttttagatacattgaataattaatgtatacggtcacatttatgggttagatacattaattatt 14113259  T
Q  282 ggatatacctaaaaagtt 299  Q
    |||| |||||||||||||    
T  14113258 ggatgtacctaaaaagtt 14113241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 300
Target Start/End: Original strand, 1784091 - 1784202
Alignment:
Q  189 tccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttggatata 288  Q
    ||||||||||||||||| |||||||| | ||||||  || |||||||  |||||||||||| ||| |||||||||||||||||||||||| || ||| ||    
T  1784091 tccggtcacatttataaacaaaaaatgattttttagatacattgaatatttaatgtatccggtcatatttatgggttagatacattaattattagatgta 1784190  T
Q  289 cctaaaaagttg 300  Q
     |||||||||||    
T  1784191 tctaaaaagttg 1784202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 300
Target Start/End: Complemental strand, 42158520 - 42158409
Alignment:
Q  192 ggtcacatttataagcaaaaaataac----tttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttggatat 287  Q
    |||||||||||||||||||||| ||     ||||||  || ||||||| ||||||||||||  ||||||||||| |||||||||||| ||| |||||| |    
T  42158520 ggtcacatttataagcaaaaaaaaaaagattttttagatacattgaataattaatgtatccagtcacatttatgagttagatacatt-attattggatgt 42158422  T
Q  288 acctaaaaagttg 300  Q
    |||||||||||||    
T  42158421 acctaaaaagttg 42158409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 300
Target Start/End: Original strand, 18147805 - 18147924
Alignment:
Q  181 atacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattct 280  Q
    ||||||||| || ||||||||||| |||||||| ||||||||| ||  ||||||| | ||||||||||  ||| | |||| ||| |||||||| | || |    
T  18147805 atacttccttcgatcacatttatatgcaaaaaaaaactttttaggttcattgaataactaatgtatccagtcataattataggtcagatacatgagttat 18147904  T
Q  281 tggatatacctaaaaagttg 300  Q
    |  |||||||||||||||||    
T  18147905 tcaatatacctaaaaagttg 18147924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 30358714 - 30358648
Alignment:
Q  193 gtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttat 260  Q
    |||||||||||||| |||||| ||||||||| ||||||||||| | ||||||||||| ||||||||||    
T  30358714 gtcacatttataag-aaaaaacaactttttaggtatattgaataaataatgtatccggtcacatttat 30358648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 6616650 - 6616590
Alignment:
Q  187 cctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||||||||||||||||||||||||||| | |||||| ||| || |||| |||||||||||    
T  6616650 cctccggtcacatttataagcaaaaaatgattttttaggtacatggaataattaatgtatc 6616590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 274
Target Start/End: Original strand, 20694414 - 20694506
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacatt 274  Q
    |||| |||||||| |||||||||| ||||||  |||||||||  || ||||||| |||||| ||||   |||||||||| |||||||||||||    
T  20694414 tactccctccggttacatttataaacaaaaatcaactttttagatacattgaataattaatttatcaagtcacatttataggttagatacatt 20694506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 278
Target Start/End: Complemental strand, 8169042 - 8168956
Alignment:
Q  191 cggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaatt 278  Q
    ||||||||||||||||||||||| |  ||||||  || |||||||||||||| ||| | ||||||||||| | | |||||||||||||    
T  8169042 cggtcacatttataagcaaaaaacat-tttttatatacattgaatgattaatatatgcaatcacatttatagatcagatacattaatt 8168956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 14113214 - 14113273
Alignment:
Q  188 ctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||||||||||||| ||||||||||||||||||||| ||| ||  ||| |||||||||||    
T  14113214 ctccggtcacatttctaagcaaaaaataactttttaggtacatccaataattaatgtatc 14113273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 27988084 - 27988139
Alignment:
Q  192 ggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||||||||||||||||||||| ||||||||||||  ||||||| | |||||||||    
T  27988084 ggtcacatttataagcaaaaaacaactttttaagttcattgaataagtaatgtatc 27988139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 28045386 - 28045441
Alignment:
Q  192 ggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||||||||||||||||||||| ||||||||||||  ||||||| | |||||||||    
T  28045386 ggtcacatttataagcaaaaaacaactttttaagttcattgaataagtaatgtatc 28045441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 1784235 - 1784169
Alignment:
Q  181 atacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||||||||| |||||||||||||||||||||| |||||||||  || ||  ||| |||||||||||    
T  1784235 atacttcctctggtcacatttataagcaaaaaacaactttttagatacatctaataattaatgtatc 1784169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 2602054 - 2602112
Alignment:
Q  188 ctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtat 246  Q
    ||||| ||||||||||||| ||||||||| ||||||||| |||| ||| ||||||||||    
T  2602054 ctccgatcacatttataagtaaaaaataattttttaagtttattaaataattaatgtat 2602112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 40737967 - 40737902
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||| ||||| |||| ||||||||||||||||||  |||||| ||| ||||||| |||||||||||    
T  40737967 tactccctccagtcatatttataagcaaaaaatagttttttaggtacattgaataattaatgtatc 40737902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 14110085 - 14110117
Alignment:
Q  189 tccggtcacatttataagcaaaaaataactttt 221  Q
    |||||||||||||||||||||||||||||||||    
T  14110085 tccggtcacatttataagcaaaaaataactttt 14110117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 278
Target Start/End: Complemental strand, 24185641 - 24185581
Alignment:
Q  218 tttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaatt 278  Q
    |||||| ||| ||||||| ||||||||||||  |||||||||| ||||||||| |||||||    
T  24185641 tttttaggtacattgaataattaatgtatccagtcacatttataggttagatatattaatt 24185581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 296
Target Start/End: Original strand, 40737816 - 40737931
Alignment:
Q  181 atacttcctccggtcacatttataagcaaaaaataactttttaag-tatattgaatgattaatgtatccgatcacatttatgggttagatacattaattc 279  Q
    ||||||||||| |||| |||||||||  ||||  ||||||||  | || ||||||| ||||||||||||| |||||||||  ||| |||||||||||||     
T  40737816 atacttcctccagtcatatttataagagaaaaccaactttttttgatacattgaataattaatgtatccggtcacattta-aggtcagatacattaatta 40737914  T
Q  280 ttggatatacctaaaaa 296  Q
    ||  || ||||||||||    
T  40737915 ttcaatgtacctaaaaa 40737931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 24185525 - 24185592
Alignment:
Q  181 atacttcctccggtcacatttataagcaaaaaataactttttaag-tatattgaatgattaatgtatc 247  Q
    ||||||| |||||||||||||||||||||||||| | ||||| || || ||||||| |||||| ||||    
T  24185525 atacttcatccggtcacatttataagcaaaaaatgatttttttagatacattgaataattaatatatc 24185592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 236
Target Start/End: Complemental strand, 30857374 - 30857320
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatg 236  Q
    |||| ||||| |||||||||||||||||||||| ||||||||  | |||||||||    
T  30857374 tactccctcctgtcacatttataagcaaaaaattactttttagatttattgaatg 30857320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 9428195 - 9428142
Alignment:
Q  193 gtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtat 246  Q
    |||||||||||||| ||||||||  |||||||||| ||| ||| ||||||||||    
T  9428195 gtcacatttataagaaaaaaatatttttttaagtacatttaataattaatgtat 9428142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 6590775 - 6590815
Alignment:
Q  179 atatacttcctccggtcacatttataagcaaaaaataactt 219  Q
    ||||||| |||||| |||||||||||||||||||| |||||    
T  6590775 atatactccctccgttcacatttataagcaaaaaacaactt 6590815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 194 - 300
Target Start/End: Complemental strand, 34670485 - 34670380
Alignment:
Q  194 tcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttggatatacctaa 293  Q
    ||||||||||||||||||||| |||||| || || ||||||| |||||||||||||||||||||||||  ||||||||||||||  |||||| |||||||    
T  34670485 tcacatttataagcaaaaaatgacttttaaa-tacattgaataattaatgtatccgatcacatttatgtattagatacattaatgattggatgtacctaa 34670387  T
Q  294 aaagttg 300  Q
    |||||||    
T  34670386 aaagttg 34670380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 2399845 - 2399751
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaa 276  Q
    |||| ||||| |||| ||||||||  |||||||||||||||||||||||||||| ||||||||||||| ||||||||||  ||||||||||||||    
T  2399845 tactccctcctgtcatatttataaataaaaaataactttttaagtatattgaataattaatgtatccggtcacatttataagttagatacattaa 2399751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 299
Target Start/End: Original strand, 23097511 - 23097613
Alignment:
Q  196 acatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttggatatacctaaaa 295  Q
    ||||||||||||||||| | |||||||| ||| ||||||  |||||||||||| |||||||||||  |||| ||||||||||| ||  || |||||||||    
T  23097511 acatttataagcaaaaa-tgactttttaggtacattgaacaattaatgtatcccatcacatttataagttaaatacattaattattcaatctacctaaaa 23097609  T
Q  296 agtt 299  Q
    ||||    
T  23097610 agtt 23097613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 2399702 - 2399760
Alignment:
Q  189 tccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    ||||||||||||||||||||||||| |||||| |||||| |||||||  ||||||||||    
T  2399702 tccggtcacatttataagcaaaaaacaactttctaagtacattgaatagttaatgtatc 2399760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 247
Target Start/End: Original strand, 34670348 - 34670413
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||| ||||||||||||||||||||||||||| ||||||||| ||| ||  ||| |||||||||||    
T  34670348 tactccctccggtcacatttataagcaaaaaacaactttttaggtacatccaatcattaatgtatc 34670413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 247
Target Start/End: Complemental strand, 12810447 - 12810388
Alignment:
Q  188 ctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    ||||| |||||||| ||||||||| | ||||||||| ||||||||||| |||||||||||    
T  12810447 ctccgatcacatttgtaagcaaaacacaactttttaggtatattgaataattaatgtatc 12810388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 300
Target Start/End: Original strand, 12810316 - 12810421
Alignment:
Q  194 tcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttggatatacctaa 293  Q
    |||||||||||| ||||||  ||| |||||  || ||||||| |||||||||| || |||||||||  ||  ||||||||||||| ||  ||||||||||    
T  12810316 tcacatttataaccaaaaaccaacgttttagatacattgaataattaatgtattcggtcacattta-aggccagatacattaattattcaatatacctaa 12810414  T
Q  294 aaagttg 300  Q
    |||||||    
T  12810415 aaagttg 12810421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 296
Target Start/End: Complemental strand, 15996241 - 15996147
Alignment:
Q  202 ataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttggatatacctaaaaa 296  Q
    |||||||||||| |  ||||||  || ||||||| |||||||||||| ||||| ||||| ||| ||||||||||||| ||  || ||||||||||    
T  15996241 ataagcaaaaaacacttttttagatacattgaataattaatgtatccaatcacgtttataggtcagatacattaattattcaatgtacctaaaaa 15996147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 249
Target Start/End: Original strand, 18701016 - 18701088
Alignment:
Q  179 atatacttcctccggtcacatttataagc--aaaaaataactttttaagtatattgaatgattaatgtatccg 249  Q
    ||||||| |||||||||||||||| ||||  |||||| ||||||||| || |||||||| ||||||| |||||    
T  18701016 atatactccctccggtcacatttacaagcaaaaaaaacaactttttaggtttattgaataattaatgcatccg 18701088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 35274408 - 35274448
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataacttttt 222  Q
    |||| |||||||||||||||||||||||||||| |||||||    
T  35274408 tactccctccggtcacatttataagcaaaaaatcacttttt 35274448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 178 - 278
Target Start/End: Complemental strand, 30005729 - 30005627
Alignment:
Q  178 tatatacttcctccggtcacatttataagcaaaaaata--actttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacatta 275  Q
    |||||||| |||||  |||||| ||||||||||||| |  | ||||||  || ||||||| |||||| |||  | ||||||||||| |||||||||||||    
T  30005729 tatatactccctccaatcacatatataagcaaaaaaaacaaatttttagatacattgaataattaatatatttggtcacatttatgagttagatacatta 30005630  T
Q  276 att 278  Q
    |||    
T  30005629 att 30005627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 3094483 - 3094441
Alignment:
Q  179 atatacttcctccggtcacatttataagcaaaaaataactttt 221  Q
    ||||||| |||||| ||||||||||||| ||||||||||||||    
T  3094483 atatactccctccgatcacatttataagtaaaaaataactttt 3094441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 45444720 - 45444782
Alignment:
Q  189 tccggtcacatttataagcaaaaaat-aactttttaagtatattgaatgattaatgtatccga 250  Q
    |||| ||||||||||||||||||||  |||||||||||| |||||||| | |||||| |||||    
T  45444720 tccgatcacatttataagcaaaaaaacaactttttaagtttattgaataactaatgtttccga 45444782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 13468978 - 13468925
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaat 235  Q
    |||||||||| |||||||||||||| |||||| || |||||| ||| |||||||    
T  13468978 tacttcctcctgtcacatttataaggaaaaaacaattttttatgtagattgaat 13468925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 17801370 - 17801415
Alignment:
Q  179 atatacttcctccggtcacatttataagcaaaaaataactttttaa 224  Q
    ||||||||||||  ||||||| ||||||||||||| ||||||||||    
T  17801370 atatacttcctctagtcacatctataagcaaaaaacaactttttaa 17801415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 275
Target Start/End: Complemental strand, 36720274 - 36720217
Alignment:
Q  218 tttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacatta 275  Q
    |||||| || |||||||| ||||||||||| ||||||||||||  |||| ||||||||    
T  36720274 tttttaggtttattgaataattaatgtatctgatcacatttatatgttatatacatta 36720217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 29229665 - 29229709
Alignment:
Q  179 atatacttcctccggtcacatttataagcaaaaaataacttttta 223  Q
    ||||||| | ||||||||||| ||||||||||||| |||||||||    
T  29229665 atatactccatccggtcacatatataagcaaaaaacaacttttta 29229709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 182 - 300
Target Start/End: Original strand, 16867613 - 16867731
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattctt 281  Q
    |||| |||| |||||||||||||||||||||| ||||||||| ||| ||||||| | ||||| || || ||| ||||||||||||||||||| |||| ||    
T  16867613 tactccctctggtcacatttataagcaaaaaacaactttttaggtacattgaataactaatgcattcggtcatatttatgggttagatacatcaattatt 16867712  T
Q  282 ggatatacctaaaaagttg 300  Q
    |||| ||||||||||||||    
T  16867713 ggatgtacctaaaaagttg 16867731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 296
Target Start/End: Original strand, 18093780 - 18093887
Alignment:
Q  189 tccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttggatata 288  Q
    ||||||||||||||||| ||||||| || ||||||| || ||||||| |||||||||||   |||||||||| ||| ||||||||||||| ||  ||| |    
T  18093780 tccggtcacatttataaacaaaaaacaaatttttaaatacattgaataattaatgtatcttgtcacatttataggtcagatacattaattattcaataaa 18093879  T
Q  289 cctaaaaa 296  Q
    ||||||||    
T  18093880 cctaaaaa 18093887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 296
Target Start/End: Original strand, 29212841 - 29212952
Alignment:
Q  185 ttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttgga 284  Q
    |||||| ||||||||||||||| |||||| |  ||||||  |||||||||| || |||||||||  |||||||||| ||| ||||||||||||| ||  |    
T  29212841 ttcctctggtcacatttataagtaaaaaacatttttttagatatattgaataatcaatgtatccagtcacatttataggtcagatacattaattattcaa 29212940  T
Q  285 tatacctaaaaa 296  Q
    | ||||||||||    
T  29212941 tgtacctaaaaa 29212952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 195 - 272
Target Start/End: Original strand, 27696621 - 27696698
Alignment:
Q  195 cacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagataca 272  Q
    |||||||||||  ||||||||||||||||| | |||| |||  |||||||||||||||||||||||  ||||||||||    
T  27696621 cacatttataaataaaaaataactttttaaatttattaaatatttaatgtatccgatcacatttataagttagataca 27696698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 30122088 - 30122035
Alignment:
Q  194 tcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    ||||||||||||||||||||||| |||||| ||||||||||| |||||||||||    
T  30122088 tcacatttataagcaaaaaataattttttaggtatattgaataattaatgtatc 30122035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 19790718 - 19790781
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgta 245  Q
    ||||||||||||||||||||||||||||||| ||  |||||| ||| ||||||| |||||||||    
T  19790718 tacttcctccggtcacatttataagcaaaaagtagttttttaggtacattgaataattaatgta 19790781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 1779488 - 1779553
Alignment:
Q  181 atacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtat 246  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||| ||| ||||||| ||| ||||||    
T  1779488 atactccctccggtcacatttataaacaaaacataactttttaggtacattgaataattgatgtat 1779553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 55121308 - 55121241
Alignment:
Q  193 gtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttat 260  Q
    |||||||||||||||||||||||||||||||  | |||| ||| ||||||||||  | ||||||||||    
T  55121308 gtcacatttataagcaaaaaataactttttagatttattaaataattaatgtatttggtcacatttat 55121241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 296
Target Start/End: Complemental strand, 19790868 - 19790754
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattctt 281  Q
    |||| |||||||||||||||||||| |||||| |  ||||||  || |||||||  || |||||| | ||||||||||| ||| || |||||||||| ||    
T  19790868 tactccctccggtcacatttataagtaaaaaacacttttttagatacattgaatacttgatgtatgcaatcacatttataggtaaggtacattaattatt 19790769  T
Q  282 ggatatacctaaaaa 296  Q
      || ||||||||||    
T  19790768 caatgtacctaaaaa 19790754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 26331361 - 26331299
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgt 244  Q
    |||| ||||||||||||||||||||||||||| ||||||||| ||  |||||| || ||||||    
T  26331361 tactccctccggtcacatttataagcaaaaaacaactttttaggttcattgaaagactaatgt 26331299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 41067799 - 41067721
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttat 260  Q
    |||| ||||| ||||||||||  || ||||||||||||||||| || ||||||| ||||| |||||  |||||||||||    
T  41067799 tactccctcctgtcacatttacgagaaaaaaataactttttaaatacattgaataattaaggtatctaatcacatttat 41067721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 49658302 - 49658347
Alignment:
Q  201 tataagcaaaaaataactttttaagtatattgaatgattaatgtat 246  Q
    |||||||||||||||||||||||||| ||||||||||  |||||||    
T  49658302 tataagcaaaaaataactttttaagtttattgaatgaaaaatgtat 49658347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 49733624 - 49733681
Alignment:
Q  189 tccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtat 246  Q
    ||||||||||||||||||||||| |||||||||||  | ||||||||  |||||||||    
T  49733624 tccggtcacatttataagcaaaacataactttttagatttattgaatacttaatgtat 49733681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 18093914 - 18093858
Alignment:
Q  191 cggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    ||||||||||||||||||| ||| || |||||| || |||||||| |||||||||||    
T  18093914 cggtcacatttataagcaataaacaagtttttaggtttattgaataattaatgtatc 18093858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 46360480 - 46360535
Alignment:
Q  192 ggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||||| ||||||||||||| |||| |||||||| ||||||||| |||||| ||||    
T  46360480 ggtcacgtttataagcaaaatataattttttaagcatattgaataattaatatatc 46360535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 29212979 - 29212923
Alignment:
Q  191 cggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||||||||||||||||||||||    |||||| ||| ||||||| |||||||||||    
T  29212979 cggtcacatttataagcaaaaaactgttttttaggtacattgaataattaatgtatc 29212923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 38603116 - 38603072
Alignment:
Q  180 tatacttcctccggtcacatttataagcaaaaaataactttttaa 224  Q
    |||||| | |||||||||||||||||||||||||| | |||||||    
T  38603116 tatactccatccggtcacatttataagcaaaaaattattttttaa 38603072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 40793576 - 40793620
Alignment:
Q  191 cggtcacatttataagcaaaaaataactttttaagtatattgaat 235  Q
    |||||||||||||||||||||||||  ||||||| || |||||||    
T  40793576 cggtcacatttataagcaaaaaatacttttttaaatacattgaat 40793620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 50561204 - 50561176
Alignment:
Q  185 ttcctccggtcacatttataagcaaaaaa 213  Q
    |||||||||||||||||||||||||||||    
T  50561204 ttcctccggtcacatttataagcaaaaaa 50561176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 182 - 300
Target Start/End: Complemental strand, 14509966 - 14509848
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattctt 281  Q
    |||||| |||||||||||||||||  ||||||||| ||||||  |||||||||| |||||||||||| |||| ||||||| |||| ||||||||||| ||    
T  14509966 tacttcatccggtcacatttataaataaaaaataattttttagatatattgaataattaatgtatccaatcatatttatgagttaaatacattaattatt 14509867  T
Q  282 ggatatacctaaaaagttg 300  Q
    | || ||| ||||||||||    
T  14509866 gaatgtacttaaaaagttg 14509848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 301
Target Start/End: Complemental strand, 5865986 - 5865867
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattctt 281  Q
    |||| ||||||||||||||||||||||||||| |  |||||| ||  ||||||| ||| || |||||| ||||||||||  ||||||||||||| || ||    
T  5865986 tactccctccggtcacatttataagcaaaaaacacatttttaggttcattgaataattgatatatccggtcacatttatatgttagatacattagttatt 5865887  T
Q  282 ggatatacctaaaaagttgg 301  Q
      || |||||||||||||||    
T  5865886 aaatgtacctaaaaagttgg 5865867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 296
Target Start/End: Complemental strand, 8568010 - 8567907
Alignment:
Q  193 gtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttggatataccta 292  Q
    ||||||||||||| |||||||| | ||||||| || ||||||| |||||||||||   ||||||||||| ||| |||||||||||| |||||| |||||     
T  8568010 gtcacatttataaacaaaaaatgattttttaaatacattgaataattaatgtatcttgtcacatttatgagttggatacattaattattggatgtacctt 8567911  T
Q  293 aaaa 296  Q
    ||||    
T  8567910 aaaa 8567907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 299
Target Start/End: Original strand, 28499775 - 28499894
Alignment:
Q  180 tatacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattc 279  Q
    |||||| |||||||||||||||||||||||||||||| ||||||  |  ||||||| | ||||||||||| ||| | |||| | ||| |||||||||||     
T  28499775 tatactccctccggtcacatttataagcaaaaaataattttttagattcattgaataactaatgtatccggtcataattatagattaaatacattaatta 28499874  T
Q  280 ttggatatacctaaaaagtt 299  Q
    ||  ||||| ||||||||||    
T  28499875 ttcaatatatctaaaaagtt 28499894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 189 - 276
Target Start/End: Complemental strand, 30046445 - 30046358
Alignment:
Q  189 tccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaa 276  Q
    |||||| ||||||||||||||||||| || |||||  || ||||||| |||||||||||||  ||||||||| |||||||||||||||    
T  30046445 tccggttacatttataagcaaaaaatcacattttagatacattgaataattaatgtatccggccacatttataggttagatacattaa 30046358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 300
Target Start/End: Complemental strand, 19522658 - 19522545
Alignment:
Q  187 cctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttggata 286  Q
    ||||| ||||| | |||||  ||||||| |||||||| ||| ||| ||| |||||| |||  |||||||||||||||||||||||||||||| ||| ||     
T  19522658 cctccagtcacttatataaataaaaaatgactttttaggtacattaaataattaatatatttgatcacatttatgggttagatacattaattattgaatg 19522559  T
Q  287 tacctaaaaagttg 300  Q
    ||  ||||||||||    
T  19522558 tatttaaaaagttg 19522545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 278
Target Start/End: Original strand, 8355556 - 8355640
Alignment:
Q  194 tcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaatt 278  Q
    ||||||||||||| ||||| | |  |||||| |||||| ||| ||||||||||||||||||||||||  ||| ||||||||||||    
T  8355556 tcacatttataagtaaaaattgatattttaaatatattaaataattaatgtatccgatcacatttatatgttggatacattaatt 8355640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 259
Target Start/End: Complemental strand, 43221709 - 43221629
Alignment:
Q  179 atatacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacattta 259  Q
    |||||||||  ||| |||||||||||||||||||||||||||||| || |||||||  ||||||||||  | |||||||||    
T  43221709 atatacttcaaccgatcacatttataagcaaaaaataactttttaggtttattgaaaaattaatgtatgtggtcacattta 43221629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 260
Target Start/End: Complemental strand, 7065719 - 7065652
Alignment:
Q  193 gtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttat 260  Q
    ||||||||||||||||||||  |||||||||| |  ||||||| ||||||||||| ||||||||||||    
T  7065719 gtcacatttataagcaaaaatcaactttttaaattcattgaataattaatgtatctgatcacatttat 7065652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 275
Target Start/End: Complemental strand, 11089428 - 11089345
Alignment:
Q  192 ggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacatta 275  Q
    ||||||||||||||| ||||||||| |||||||||  || |||| |||||| | |||| ||||||||||  |||||||||||||    
T  11089428 ggtcacatttataagtaaaaaataattttttaagttcatcgaataattaatatttccggtcacatttatatgttagatacatta 11089345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 300
Target Start/End: Original strand, 14751122 - 14751238
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattctt 281  Q
    |||| ||||||||||||| |||||||||||  | |||||||| ||  ||||||| ||||||||||||  | |||||||| |||||||||||| || | ||    
T  14751122 tactccctccggtcacatgtataagcaaaa--tgactttttaggtgcattgaataattaatgtatccagttacatttataggttagatacatcaactatt 14751219  T
Q  282 ggatatacctaaaaagttg 300  Q
      || ||||||||||||||    
T  14751220 caatgtacctaaaaagttg 14751238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 14751270 - 14751217
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaat 235  Q
    |||| ||||||||||||||||||||||||||| ||||||||| ||| |||||||    
T  14751270 tactccctccggtcacatttataagcaaaaaacaactttttaggtacattgaat 14751217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 194 - 253
Target Start/End: Original strand, 18200668 - 18200727
Alignment:
Q  194 tcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatca 253  Q
    ||||||||||||||||||| ||| ||||||||| |||||||| | ||||||||| |||||    
T  18200668 tcacatttataagcaaaaattaattttttaagtttattgaataactaatgtatctgatca 18200727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 278
Target Start/End: Complemental strand, 10244132 - 10244042
Alignment:
Q  188 ctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaatt 278  Q
    |||| |||| ||||||||| |||||| |  ||||||||  |||||||| |||||||||||   |||||||||| ||| |||||||||||||    
T  10244132 ctcctgtcatatttataagtaaaaaaaatatttttaagcttattgaataattaatgtatctattcacatttataggtcagatacattaatt 10244042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 245
Target Start/End: Complemental strand, 35458266 - 35458208
Alignment:
Q  187 cctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgta 245  Q
    ||||||||||||| |||||||||||| ||||| |||| || |||||||||| |||||||    
T  35458266 cctccggtcacatatataagcaaaaagtaactatttaggtttattgaatgactaatgta 35458208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 16829198 - 16829250
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaat 235  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||  |||||||    
T  16829198 tacttcctctggtcacatttataagc-aaaaataactttttaagttcattgaat 16829250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 270
Target Start/End: Complemental strand, 28351086 - 28351002
Alignment:
Q  185 ttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagata 270  Q
    |||||||||||| |||||||||||||||| |||||||||  |  ||||||| | ||||||||||| ||  |||||| |||||||||    
T  28351086 ttcctccggtcatatttataagcaaaaaacaactttttagattcattgaataactaatgtatccggtc-tatttataggttagata 28351002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 246
Target Start/End: Complemental strand, 28499919 - 28499863
Alignment:
Q  189 tccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtat 246  Q
    |||| ||||||||||||| ||||||||||||||||  |||||||||| ||||||||||    
T  28499919 tccgatcacatttataag-aaaaaataactttttagatatattgaataattaatgtat 28499863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 278
Target Start/End: Original strand, 31146675 - 31146764
Alignment:
Q  189 tccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaatt 278  Q
    |||||| ||||||||||||||||||  | ||||||  |  | | ||| |||||||||||||||||||||| | ||||||||||| |||||    
T  31146675 tccggtaacatttataagcaaaaaaataatttttagatgcaataaataattaatgtatccgatcacattttttggttagatacaataatt 31146764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 32522676 - 32522603
Alignment:
Q  179 atatacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatc 252  Q
    |||||||  |||||||||| ||||||| |||||||||  ||||||| || ||||||| ||||||||||| ||||    
T  32522676 atatactcactccggtcacgtttataatcaaaaaatagttttttaaatacattgaataattaatgtatctgatc 32522603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 32741450 - 32741379
Alignment:
Q  189 tccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttat 260  Q
    |||| ||||||||||||||||||||||| |||||| ||  ||| ||| |||| |||||| | ||||||||||    
T  32741450 tccgatcacatttataagcaaaaaataattttttaggttcattaaataattattgtatctggtcacatttat 32741379  T

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Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 6266285 - 6266219
Alignment:
Q  181 atacttcctccggtcacatttataagcaaaaaata-actttttaagtatattgaatgattaatgtat 246  Q
    ||||| ||||||||||||||||||||||||||| | | |||||| || ||||||||  |||||||||    
T  6266285 atactccctccggtcacatttataagcaaaaaaaacaatttttaggtttattgaatacttaatgtat 6266219  T

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Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 8850258 - 8850291
Alignment:
Q  181 atacttcctccggtcacatttataagcaaaaaat 214  Q
    ||||| ||||||||||||||||||||||||||||    
T  8850258 atactccctccggtcacatttataagcaaaaaat 8850291  T

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Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 15474420 - 15474453
Alignment:
Q  190 ccggtcacatttataagcaaaaaataacttttta 223  Q
    ||||||||||||||||| ||||||||||||||||    
T  15474420 ccggtcacatttataagaaaaaaataacttttta 15474453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 35458130 - 35458179
Alignment:
Q  191 cggtcacatttataagcaaaaaataactttttaagtatattgaatgatta 240  Q
    |||||||||||||||| ||||| |||||||||||||  ||||||| ||||    
T  35458130 cggtcacatttataaggaaaaattaactttttaagttcattgaataatta 35458179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 38699044 - 38699105
Alignment:
Q  185 ttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtat 246  Q
    ||||||||||||||||||| | |||||||||| |||||| ||| |||  || ||||||||||    
T  38699044 ttcctccggtcacatttatgaacaaaaaataattttttaggtacattagataattaatgtat 38699105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Complemental strand, 40773113 - 40773076
Alignment:
Q  186 tcctccggtcacatttataagcaaaaaataacttttta 223  Q
    ||||||||||||||||||||||||||||  ||||||||    
T  40773113 tcctccggtcacatttataagcaaaaaaccacttttta 40773076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 14509828 - 14509880
Alignment:
Q  195 cacatttataagcaaaaaat-aactttttaagtatattgaatgattaatgtat 246  Q
    |||||||||||||||||||  ||||||||||||| ||| ||| ||||||||||    
T  14509828 cacatttataagcaaaaaaacaactttttaagtacattcaataattaatgtat 14509880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 30046296 - 30046367
Alignment:
Q  178 tatatacttcctccggtcacatttataagcaaaaaata--actttttaagtatattgaatgattaatgtatc 247  Q
    |||||| |||||||||||||||||||||| |||||| |  ||| ||||  ||||||||||  ||||||||||    
T  30046296 tatatatttcctccggtcacatttataagtaaaaaaaactactctttagatatattgaatagttaatgtatc 30046367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 209
Target Start/End: Complemental strand, 34255313 - 34255285
Alignment:
Q  181 atacttcctccggtcacatttataagcaa 209  Q
    |||||||||||||||||||||||||||||    
T  34255313 atacttcctccggtcacatttataagcaa 34255285  T

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Target: scaffold0514 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 194 - 299
Target Start/End: Original strand, 5827 - 5932
Alignment:
Q  194 tcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttggatatacctaa 293  Q
    ||||||||||||||||||||| |||||||| ||| ||||||| | ||||||||||| |||  || || ||||||||||||| ||| |||||| |||||||    
T  5827 tcacatttataagcaaaaaatgactttttaggtacattgaataactaatgtatccggtcatcttcataggttagatacattgattattggatgtacctaa 5926  T
Q  294 aaagtt 299  Q
    ||||||    
T  5927 aaagtt 5932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 187 - 278
Target Start/End: Complemental strand, 16260763 - 16260672
Alignment:
Q  187 cctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaatt 278  Q
    |||||||||||||||||||| ||||||| | |||||| ||||||||||| |||||||||| |  |||||||||| ||||||| |||||||||    
T  16260763 cctccggtcacatttataagaaaaaaattattttttacgtatattgaataattaatgtattcagtcacatttataggttagagacattaatt 16260672  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 180 - 278
Target Start/End: Original strand, 862815 - 862913
Alignment:
Q  180 tatacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaatt 278  Q
    |||||| |||||||||| ||||||||||||||| | |||||||| ||| ||||||| | |  |||||||  |||||||||| |||||||||||||||||    
T  862815 tatactccctccggtcatatttataagcaaaaattgactttttaggtacattgaataactggtgtatccagtcacatttataggttagatacattaatt 862913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 24253027 - 24252961
Alignment:
Q  181 atacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||| ||||||| |||||||||||    
T  24253027 atacttcctctggtcatatttataagcaaaaaataactttttaggtacattgaataattaatgtatc 24252961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 278
Target Start/End: Complemental strand, 9910640 - 9910544
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaa-taactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaatt 278  Q
    |||||||||  |||||||||||||| |||||| | | |||||| ||||||||||| ||||||||||||| |||| ||||| |||||||||||||||||    
T  9910640 tacttcctctagtcacatttataagtaaaaaaatgattttttaggtatattgaataattaatgtatccggtcac-tttataggttagatacattaatt 9910544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 185 - 299
Target Start/End: Original strand, 24252883 - 24252993
Alignment:
Q  185 ttcctccggtcacatttataagcaaaaaa-taactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttgg 283  Q
    |||||||||| | ||||||||| |||||| | |||||||||||||||||||| |||||||||| || |||||||||     |||||||||||||| ||      
T  24252883 ttcctccggttatatttataagtaaaaaaatgactttttaagtatattgaataattaatgtattcggtcacattta-----tagatacattaattattca 24252977  T
Q  284 atatacctaaaaagtt 299  Q
    || |||||||||||||    
T  24252978 atgtacctaaaaagtt 24252993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 276
Target Start/End: Original strand, 5069947 - 5070029
Alignment:
Q  194 tcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaa 276  Q
    |||||||||||||||||||| |||||||||  || ||||||| |||||||||||||  || ||| || |||||||||||||||    
T  5069947 tcacatttataagcaaaaaacaactttttagatacattgaataattaatgtatccggccatattaataggttagatacattaa 5070029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 3846426 - 3846490
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtat 246  Q
    |||| ||| |||||||||||||||||||||||||| |||||||||  ||||||| | ||||||||    
T  3846426 tactcccttcggtcacatttataagcaaaaaataattttttaagttcattgaataaataatgtat 3846490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 296
Target Start/End: Original strand, 31159086 - 31159186
Alignment:
Q  196 acatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaattcttggatatacctaaaa 295  Q
    ||||||||||| ||||||||  |||||| ||  ||||||| |||||||||| || ||||||||||  ||||||||||||| || ||  |||||| |||||    
T  31159086 acatttataagtaaaaaatacatttttatgttcattgaataattaatgtattcggtcacatttatatgttagatacattagttattcaatatacttaaaa 31159185  T
Q  296 a 296  Q
    |    
T  31159186 a 31159186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 674199 - 674154
Alignment:
Q  178 tatatacttcctccggtcacatttataagcaaaaaataacttttta 223  Q
    ||||||||| |||||||||||||||||||||||||| || ||||||    
T  674199 tatatactttctccggtcacatttataagcaaaaaacaatttttta 674154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 278
Target Start/End: Complemental strand, 26296342 - 26296258
Alignment:
Q  194 tcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatccgatcacatttatgggttagatacattaatt 278  Q
    ||||||||||||| ||||||| | ||||||| || ||||||| ||||| |||| |  |||||||||| | ||| |||||||||||    
T  26296342 tcacatttataagtaaaaaatgattttttaaatacattgaataattaacgtatacagtcacatttatagattaaatacattaatt 26296258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 2271263 - 2271229
Alignment:
Q  189 tccggtcacatttataagcaaaaaataacttttta 223  Q
    |||| ||||||||||||||||||||||||||||||    
T  2271263 tccgatcacatttataagcaaaaaataacttttta 2271229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 4143773 - 4143815
Alignment:
Q  181 atacttcctccggtcacatttataagcaaaaaataacttttta 223  Q
    ||||| |||||| ||||||||||||||||||||||| ||||||    
T  4143773 atactccctccgatcacatttataagcaaaaaataaattttta 4143815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 862966 - 862902
Alignment:
Q  182 tacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||| |||||||||||||||||||||||||||  | ||||||  || ||||||| |||||||||||    
T  862966 tactccctccggtcacatttataagcaaaaaa-cattttttagatacattgaataattaatgtatc 862902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 9605361 - 9605426
Alignment:
Q  181 atacttcctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtat 246  Q
    ||||| |||||| ||| |||||||||||||||| |||||||||| |  |||||||  |||||||||    
T  9605361 atactccctccgctcaaatttataagcaaaaaacaactttttaatttaattgaatacttaatgtat 9605426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 3633758 - 3633714
Alignment:
Q  179 atatacttcctccggtcacatttataagcaaaaaataacttttta 223  Q
    ||||||| |||||| |||||||||||| |||||||| ||||||||    
T  3633758 atatactccctccgatcacatttataaacaaaaaatcacttttta 3633714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 5936 - 5876
Alignment:
Q  187 cctccggtcacatttataagcaaaaaataactttttaagtatattgaatgattaatgtatc 247  Q
    |||||||||||||||||||||||||||| | |||||| ||| || |||| |||||||||||    
T  5936 cctccggtcacatttataagcaaaaaatgattttttaggtacatggaataattaatgtatc 5876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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