View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512_low_34 (Length: 288)
Name: NF4512_low_34
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 38951124 - 38951373
Alignment:
| Q |
22 |
atcctgcgactctctccttgtacagattccctgatcctgcgactctctctttgttcagattcctgtggctcctcaaaggtctcaggacaacccgggaata |
121 |
Q |
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| T |
38951124 |
atcctgcgactctctctctgttcagattccctgaacctgcgactctctctctgttcagattcctgtggctcctcaaaggtctcaggacaacccgggaata |
38951223 |
T |
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| Q |
122 |
ccatgccaaaatatccactacctgtaattggtatagtaaaaaataattacttctatgtgatcaatattgtcactaatatatgcatgcatgtaatttaggt |
221 |
Q |
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| T |
38951224 |
ccatgccaaaatatccactacctgtaattggtatagtaaaaaataattacttctatgtgatcaatattgtcactaatatatgcatgcatgtaatttaggt |
38951323 |
T |
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| Q |
222 |
aaagatattggaagaatatcaaagtgactgaccttgttggatgaaaattt |
271 |
Q |
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| T |
38951324 |
aaagatattggaagaatatcaaagtgactgaccttgttggatgaaaattt |
38951373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 22 - 271
Target Start/End: Original strand, 38943646 - 38943883
Alignment:
| Q |
22 |
atcctgcgactctctccttgtacagattccctgatcctgcgactctctctttgttcagattcctgtggctcctcaaaggtctcaggacaacccgggaata |
121 |
Q |
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| T |
38943646 |
atcctgcgactctctctctgttcagattccctgaacctgcgactctctctctgttcagattcctgtggctcctcaaaagtctcaggacaacccgggaata |
38943745 |
T |
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| Q |
122 |
ccatgccaaaatatccactacctgtaattggtatagtaaaaaataattacttctatgtgatcaatattgtcactaatatatgcatgcatgtaatttaggt |
221 |
Q |
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| T |
38943746 |
ccatgccaaaatatccactacctgtaattggtatagtaaaaaatacttacttctatgtga---------tcactaatat----atgcatgtaatgtaggt |
38943832 |
T |
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| Q |
222 |
aaagatattggaag-aatatcaaagtgactgaccttgttggatgaaaattt |
271 |
Q |
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| T |
38943833 |
aaagatattggaagaaatatcaaagtaactgaccttgttggatgaaaattt |
38943883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 38951088 - 38951153
Alignment:
| Q |
19 |
ctgatcctgcgactctctccttgtacagattccctgatcctgcgactctctctttgttcagattcc |
84 |
Q |
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| T |
38951088 |
ctgatcctgcgactctctccttgttcagattccctaatcctgcgactctctctctgttcagattcc |
38951153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 38943610 - 38943675
Alignment:
| Q |
19 |
ctgatcctgcgactctctccttgtacagattccctgatcctgcgactctctctttgttcagattcc |
84 |
Q |
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|||| ||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||| |
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| T |
38943610 |
ctgaacctgcgactctctccttgttcagattccctaatcctgcgactctctctctgttcagattcc |
38943675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 38951070 - 38951120
Alignment:
| Q |
34 |
tctccttgtacagattccctgatcctgcgactctctctttgttcagattcc |
84 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38951070 |
tctccttgttcagattccctgatcctgcgactctctccttgttcagattcc |
38951120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 84
Target Start/End: Original strand, 38943592 - 38943642
Alignment:
| Q |
34 |
tctccttgtacagattccctgatcctgcgactctctctttgttcagattcc |
84 |
Q |
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| T |
38943592 |
tctccttgttcagattccctgaacctgcgactctctccttgttcagattcc |
38943642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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