View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512_low_37 (Length: 263)
Name: NF4512_low_37
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 20934537 - 20934781
Alignment:
| Q |
1 |
tcactcgtctttttggccttcctttcagaaacacttcatgtttgaggtttacccataatacccttatcattagttgccttctcatgtggatagaaaatga |
100 |
Q |
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| T |
20934537 |
tcactcgtctttttagccttcctttcagaaacacttcatgtttgaggtttacccataatacccttatcattagttgccttctcatgtggatagaaaatga |
20934636 |
T |
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| Q |
101 |
ttctgttctggctaccttgacattcaagtctgcttatattatcacatggtaacttaaaaattgatggcttaattgtttttcaaaactttgcacaatgaac |
200 |
Q |
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| T |
20934637 |
ttctgttctggctaccttgacattcaagtctgcttatattatcacatggtaacttaaaaattgatggcttaattgtttttcaaaactttgcacaatgaac |
20934736 |
T |
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| Q |
201 |
ttcatcatcactcatatttttagagaagaaaatcactctgcaaac |
245 |
Q |
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| T |
20934737 |
ttcatcatcactcatatttttagagaagaaaatcactctgcaaac |
20934781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 20933506 - 20933558
Alignment:
| Q |
1 |
tcactcgtctttttggccttcctttcagaaacacttcatgtttgaggtttacc |
53 |
Q |
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| T |
20933506 |
tcactcgtctttttagccttcctttcataaacgcttcatatttgaggtttacc |
20933558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 22517626 - 22517715
Alignment:
| Q |
1 |
tcactcgtctttttggccttcctttcagaaacacttcatgtttgaggtttacccataatacccttatcattagttgccttctcatgtgga |
90 |
Q |
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| T |
22517626 |
tcactagtcttcttagccttcctttcataaacacttcatatttggggtttgcctataatacccttatcattagttgccttctcatgtgga |
22517715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 43791563 - 43791490
Alignment:
| Q |
16 |
gccttcctttcagaaacacttcatgtttgaggtttacccataatacccttatcattagttgccttctcatgtgg |
89 |
Q |
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|||||||||||| |||| || ||| ||| ||||| ||||||||| |||||||||||||||| ||||||||||| |
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| T |
43791563 |
gccttcctttcataaaccctccatattttgggttttcccataataaccttatcattagttgcattctcatgtgg |
43791490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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