View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4512_low_38 (Length: 254)

Name: NF4512_low_38
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4512_low_38
NF4512_low_38
[»] chr1 (1 HSPs)
chr1 (1-247)||(33987699-33987940)
[»] chr2 (12 HSPs)
chr2 (1-245)||(9020493-9020732)
chr2 (5-247)||(9026421-9026661)
chr2 (48-245)||(8988084-8988277)
chr2 (5-228)||(9031707-9031928)
chr2 (5-170)||(9023133-9023294)
chr2 (37-166)||(8991882-8992013)
chr2 (37-167)||(8973044-8973176)
chr2 (1-142)||(8996098-8996228)
chr2 (5-123)||(8975440-8975554)
chr2 (5-134)||(9016238-9016363)
chr2 (37-132)||(9030166-9030262)
chr2 (170-232)||(8996030-8996092)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 33987940 - 33987699
Alignment:
Q  1 ttgttttctttattcttaatacattgtcatcaatctatcagagtagatacatacacataggccatcatggtgatttgccaaaaattaaattgatattctt 100  Q
    ||||||||||||||||||| ||||| |||||||||    ||||||||||||||||||||| |||||||| ||| ||||||||||||||||| ||||||||    
T  33987940 ttgttttctttattcttaaaacattatcatcaatc----agagtagatacatacacatagtccatcatgatgaattgccaaaaattaaattaatattctt 33987845  T
Q  101 gtcttaaggcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggctaaggctattatatctttcatttttgtgttca 200  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||    
T  33987844 gtcttacagcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatggactaaccgggtaaggctattatatctttcatctttgtgttca 33987745  T
Q  201 tttatttgtttttgagtgccactgttgtgtgtttctgttagaattat 247  Q
    || ||||| ||||||||||||| |||||| || ||||||||||||||    
T  33987744 ttcatttg-ttttgagtgccacagttgtgcgtgtctgttagaattat 33987699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 9020732 - 9020493
Alignment:
Q  1 ttgttttctttattcttaatacattgtcatcaatctatcagagtagatacatacacataggccatcatggtgatttgccaaaaattaaattgatattctt 100  Q
    ||||||||||||||||||| ||||| ||||||||| |    ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||     
T  9020732 ttgttttctttattcttaaaacattatcatcaatcaa----agtagatacatacacattggcca-catggtgaattgccaaaaattaaattgatattctc 9020638  T
Q  101 gtcttaaggcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggctaaggctattatatctttcatttttgtgttca 200  Q
    ||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  9020637 gtcttaaagcaaaatatcatgatcggattcttatcttattccttgcttttgttgatgggctaaccggctaagggtattatatctttcatctttgtgttca 9020538  T
Q  201 tttatttgtttttgagtgccactgttgtgtgtttctgttagaatt 245  Q
    || |||||||||||||||||||| |||||||| | ||||||||||    
T  9020537 ttcatttgtttttgagtgccactattgtgtgtgtttgttagaatt 9020493  T

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Target: chr2; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 5 - 247
Target Start/End: Complemental strand, 9026661 - 9026421
Alignment:
Q  5 tttctttattcttaatacattgtcatcaatctatcagagtaga--tacatacacataggccatcatggtgatttgccaaaaattaaattgatattcttgt 102  Q
    ||||||||||||||| ||||| |||||||||    |||||| |  |||| |||||||||||||| || ||| ||||||||||||||||||||||||||||    
T  9026661 tttctttattcttaaaacattatcatcaatc----agagtaaaaatacacacacataggccatcgtgatgaattgccaaaaattaaattgatattcttgt 9026566  T
Q  103 cttaaggcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggctaaggctattatatctttcatttttgtgttcatt 202  Q
    ||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||    
T  9026565 cttaaagcaaaatatcatgatcttattcttttcttatcccttgcttttgttgatgggctaacttgctaaggctattatatctttcatctttgtgttcatt 9026466  T
Q  203 tatttgtttttgagtgccactgttgtgtgtttctgttagaattat 247  Q
     ||||||||||||||||||||||||||||| |||||||| |||||    
T  9026465 catttgtttttgagtgccactgttgtgtgtgtctgttagtattat 9026421  T

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Target: chr2; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 48 - 245
Target Start/End: Complemental strand, 8988277 - 8988084
Alignment:
Q  48 tacatacacataggccatcatggtgatttgccaaaaattaaattgatattcttgtcttaaggcaaaatatcatgatctgattcttatcttatcccttgct 147  Q
    |||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8988277 tacatacacataggccatcatgatgaattgccaaaaataaaattgatattcttgtcttaaggcaaaatatcatgatctgattcttatcttatcccttgct 8988178  T
Q  148 tttgttgatgggctaaccggctaaggctattatatctttcatttttgtgttcatttatttgtttttgagtgccactgttgtgtgtttctgttagaatt 245  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||     ||||||||| ||||||||||||||| ||||||| ||||    
T  8988177 tttgttgatgggctaaccggctaaggctattatatctttcatctttgtgttcattc----gtttttgagagccactgttgtgtgtgtctgttataatt 8988084  T

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Target: chr2; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 228
Target Start/End: Complemental strand, 9031928 - 9031707
Alignment:
Q  5 tttctttattcttaatacattgtcatcaatctatcagagtaga--tacatacacataggccatcatggtgatttgccaaaaattaaattgatattcttgt 102  Q
    ||||||||||||||| ||||| |||||||||    |||||| |  |||| |||||||||||||| || ||| ||||||||||||||||||||||||||||    
T  9031928 tttctttattcttaaaacattatcatcaatc----agagtaaaaatacacacacataggccatcgtgatgaattgccaaaaattaaattgatattcttgt 9031833  T
Q  103 cttaaggcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggctaaggctattatatctttcatttttgtgttcatt 202  Q
    ||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||    
T  9031832 cttaaagcaaaatatcatgatcttattcttttcttatcccttgcttttgttgatgggctaacttgctaaggctattatatctttcatctttgtgttcatt 9031733  T
Q  203 tatttgtttttgagtgccactgttgt 228  Q
     |||||||||||||||||||||||||    
T  9031732 catttgtttttgagtgccactgttgt 9031707  T

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Target: chr2; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 9023294 - 9023133
Alignment:
Q  5 tttctttattcttaatacattgtcatcaatctatcagagtagatacatacacataggccatcatggtgatttgccaaaaattaaattgatattcttgtct 104  Q
    ||||||||||||||| ||||| | |||||||    | |||| |||||||||| |||||||||| | ||| ||||||||||||||||||||||||||| ||    
T  9023294 tttctttattcttaaaacattatgatcaatc----atagtaaatacatacacctaggccatcacgatgaattgccaaaaattaaattgatattcttgact 9023199  T
Q  105 taaggcaaaatatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggcta 170  Q
    ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9023198 taaagcaaagtatcatgatctgattcttatcttatcccttgcttttgttgatgggctaaccggcta 9023133  T

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Target: chr2; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 37 - 166
Target Start/End: Complemental strand, 8992013 - 8991882
Alignment:
Q  37 atcagagtagatacatacacataggccatcatggtgatttgc--caaaaattaaattgatattcttgtcttaaggcaaaatatcatgatctgattcttat 134  Q
    ||||||||| ||||||||||||||||||||||  ||| |||   ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8992013 atcagagtaaatacatacacataggccatcattatgaattgaagcaaaaattaaattgatattcttgtcttaaagcaaaatatcatgatctgattcttat 8991914  T
Q  135 cttatcccttgcttttgttgatgggctaaccg 166  Q
    |||||||||||||||||||||| |||||||||    
T  8991913 cttatcccttgcttttgttgataggctaaccg 8991882  T

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Target: chr2; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 37 - 167
Target Start/End: Complemental strand, 8973176 - 8973044
Alignment:
Q  37 atcagagtagatacatacacataggccatcatggtgatttgc--caaaaattaaattgatattcttgtcttaaggcaaaatatcatgatctgattcttat 134  Q
    ||||||||| |||| ||||||||||||| |||  ||| |||   ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  8973176 atcagagtaaatacttacacataggccaccattatgaattgaagcaaaaattaaattgatattcttgtcttgaagcaaaatatcatgatctgattcttat 8973077  T
Q  135 cttatcccttgcttttgttgatgggctaaccgg 167  Q
    |||||||||||||||||||||| ||||||||||    
T  8973076 cttatcccttgcttttgttgataggctaaccgg 8973044  T

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Target: chr2; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 8996228 - 8996098
Alignment:
Q  1 ttgttttctttattcttaatacattgtcatcaatctatcagagtagatacatacacataggccatcatggtgatttgccaaaaattaaattgatattctt 100  Q
    ||||||||||||||||||| ||||| |||||||||    | |||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||     
T  8996228 ttgttttctttattcttaaaacattatcatcaatc----atagtagatacataaacataggccatcatggtgaattgccaaaaattaaattaatattct- 8996134  T
Q  101 gtcttaaggcaaaatatcatgatctgattcttatcttatccc 142  Q
          | ||||||||| |||||||||||| |||||||||||    
T  8996133 ------aagcaaaatattatgatctgattcgtatcttatccc 8996098  T

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Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 8975554 - 8975440
Alignment:
Q  5 tttctttattcttaatacattgtcatcaatctatcagagtagatacatacacataggccatcatggtgatttgccaaaaattaaattgatattcttgtct 104  Q
    |||| |||||||||| ||||| |||||||||    |||||| ||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| ||||    
T  8975554 tttcgttattcttaaaacattatcatcaatc----agagtaaatacatacacataggccatcatgatgaattgccaacaattaaattgatattctagtct 8975459  T
Q  105 taaggcaaaatatcatgat 123  Q
    |||   |||||||||||||    
T  8975458 taaacaaaaatatcatgat 8975440  T

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Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 9016363 - 9016238
Alignment:
Q  5 tttctttattcttaatacattgtcatcaatctatcagagtagatacatacacataggccatcatggtgatttgccaaaaattaaattgatattcttgtct 104  Q
    ||||||||||||||| ||||| ||||||||     |||||| |||||||||||| |||||  ||  ||| |||  |||||||||||||||||||||||||    
T  9016363 tttctttattcttaaaacattatcatcaatt----agagtaaatacatacacatgggccacgattatgaattgaaaaaaattaaattgatattcttgtct 9016268  T
Q  105 taaggcaaaatatcatgatctgattcttat 134  Q
    ||  ||||||||||||||||||| ||||||    
T  9016267 tatagcaaaatatcatgatctgactcttat 9016238  T

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Target: chr2; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 9030262 - 9030166
Alignment:
Q  37 atcagagtagatacatacacataggccatcatggtgatttgccaaaaa-ttaaattgatattcttgtcttaaggcaaaatatcatgatctgattctt 132  Q
    ||||||||| ||| | ||||||||||||||||| ||| ||| |||||| ||||||||||||||||||||||| || |||||||| ||||||||||||    
T  9030262 atcagagtaaatagacacacataggccatcatgatgaattgtcaaaaaattaaattgatattcttgtcttaaagccaaatatcacgatctgattctt 9030166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 232
Target Start/End: Complemental strand, 8996092 - 8996030
Alignment:
Q  170 aaggctattatatctttcatttttgtgttcatttatttgtttttgagtgccactgttgtgtgt 232  Q
    |||| ||||||||||||||| ||||||||| || ||||||||||||||||||| |||||||||    
T  8996092 aaggttattatatctttcatctttgtgttctttcatttgtttttgagtgccacagttgtgtgt 8996030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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