View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512_low_40 (Length: 253)
Name: NF4512_low_40
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 112; Significance: 1e-56; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 4718520 - 4718643
Alignment:
| Q |
11 |
cataggcagaggtagaataaaaacccatataaactttttagtgcacaatagtttatattattgtaataagaaggattattttaagaaataattgggaaag |
110 |
Q |
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| T |
4718520 |
cataagcagaggtagaataaaaacccatatacactttttagtgcacaatagtttatactattgtaataagaaggattattttaagaaataattgggaaag |
4718619 |
T |
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| Q |
111 |
gagaaataattattaataagggta |
134 |
Q |
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| T |
4718620 |
gagaaataattattaataagggta |
4718643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 119 - 237
Target Start/End: Original strand, 4718868 - 4718983
Alignment:
| Q |
119 |
attattaataagggtagactaatgacaattt-ataactgtcccatatgagatttgaattctgaccacaaaatcaagctcttaccactctctgagttgaca |
217 |
Q |
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| T |
4718868 |
attattaataagggtagactaatgacaattttataactgtcccatatgagatttgaattctgaccacaaaatcaagctcttacca----ctgagttgaca |
4718963 |
T |
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| Q |
218 |
cacattattgacgtcaaaag |
237 |
Q |
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| T |
4718964 |
cacattattgacgtcaaaag |
4718983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 4708470 - 4708584
Alignment:
| Q |
35 |
ccatataaactttttagtgcacaatagtttatattattgtaataagaaggattattttaagaaataattgggaaaggagaaataattattaataagggta |
134 |
Q |
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| T |
4708470 |
ccatataaactttttagtgcacaatagtttatattattgtaataagaagtattatttttaaaacatattgggaaatgagaaataataaataataagggta |
4708569 |
T |
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| Q |
135 |
gactaatgacaattt |
149 |
Q |
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| T |
4708570 |
gactaatgacaattt |
4708584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 4739582 - 4739716
Alignment:
| Q |
16 |
gcagaggtagaataaaaacccatataaactttt-tagtgcacaatagtttatattattgtaataagaaggattattttaagaaataattgggaaaggaga |
114 |
Q |
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|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| || || ||||||||| ||| ||||||||||||||| |
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| T |
4739582 |
gcagaggtagaataaaaacccagttaaacttttttagtgcacaatagtttatattattataagaacaatgattatttttttaaaaaattgggaaaggaga |
4739681 |
T |
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| Q |
115 |
aataattattaataagggtagactaatgacaattt |
149 |
Q |
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| T |
4739682 |
aattataattaataaggttacactaaagaccattt |
4739716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 24 - 179
Target Start/End: Original strand, 4752686 - 4752843
Alignment:
| Q |
24 |
agaataaaaacccatataaactttttagtgcacaatagtttatattattgtaataagaaggatta-ttttaagaaataattgggaaaggagaaataatta |
122 |
Q |
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|||||| ||||||| |||| ||||||||||| ||||||| |||||||| |||||| |||||||| |||||| ||| ||| |||||| || |||| |||| |
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| T |
4752686 |
agaatacaaacccagttaaagtttttagtgcagaatagttaatattattataataacaaggattatttttaaaaaagaatcgggaaatgataaattatta |
4752785 |
T |
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| Q |
123 |
ttaataagggtagactaatga-caatttataactgtcccatatgagatttgaattctg |
179 |
Q |
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| T |
4752786 |
ttaataagggtacaccaatgatcattttacaactgttccatataggatttgaactctg |
4752843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 179
Target Start/End: Original strand, 4728853 - 4728984
Alignment:
| Q |
46 |
ttttagtgcacaatagtttatattattgtaataagaaggattattttaagaaataattgggaaaggagaaataattattaataagggtagactaatga-c |
144 |
Q |
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|||||||||| |||| ||||||||||| ||||| | | ||| ||| ||||||| ||||||||||||||| ||||||||||| |||| |||||||| | |
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| T |
4728853 |
ttttagtgcaaaataatttatattattataatatggattattttttaaagaaat---tgggaaaggagaaattattattaataaaggtatactaatgacc |
4728949 |
T |
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| Q |
145 |
aatttataactgtcccatatgagatttgaattctg |
179 |
Q |
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| T |
4728950 |
attttacatctgtcccatatgggatttgaaatctg |
4728984 |
T |
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