View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512_low_42 (Length: 248)
Name: NF4512_low_42
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_low_42 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 1868461 - 1868690
Alignment:
| Q |
18 |
ttctttaaatttacaatttagtaatttgacaaaactatctcaaattaatgttccatcnnnnnnncatgaatgtattgattgaccagnnnnnnntatcttt |
117 |
Q |
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| T |
1868461 |
ttctttaaatttacaatttagtaatttgacaaaactatctcaaattaatgttccatcggggg--catgaatgtattgattgaccagaaaaaaatatcttt |
1868558 |
T |
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| Q |
118 |
tcaataaatgaactcgatgatcaatctaaaactcaagttggatcctga-gagatttttagttgatatgtttaaagcctcaagtctatgtttgcggtgcaa |
216 |
Q |
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| T |
1868559 |
tcaataaatgaactcgatgatcaatctaaaactcaagttggatccttaagagatttttagttgatatgtttaaagcctcaagtctatgtttgcggtgcaa |
1868658 |
T |
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| Q |
217 |
gaaacatgtgatgataaatgctataaaaattt |
248 |
Q |
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| T |
1868659 |
gaaacatgtgatgataaatgctataaaaattt |
1868690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 1857948 - 1857992
Alignment:
| Q |
22 |
ttaaatttacaatttagtaatttgacaaaactatctcaaattaat |
66 |
Q |
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| T |
1857948 |
ttaaatttaccatttagtaatttgataaaactatctcaaattaat |
1857992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 1858521 - 1858585
Alignment:
| Q |
128 |
aactcgatgatcaatctaaaactcaagttggatcc-tgagagatttttagttgatatgtttaaag |
191 |
Q |
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| T |
1858521 |
aacttgatgatcaatctaaaactcaagttagatccttaagagattcttagttaataagtttaaag |
1858585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 222
Target Start/End: Original strand, 42059379 - 42059478
Alignment:
| Q |
124 |
aatgaactcgatgatcaatctaaaactcaagttggatcctga-gagatttttagttgatatgtttaaagcctcaagtctatgtttgcggtgcaagaaaca |
222 |
Q |
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| T |
42059379 |
aatgaacttaatgatcaatctaaaacttaagtcagattcttaagagatttttagttaatagatttaaagcctcaagtcttagtttacggtgcaagaaaca |
42059478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 52981817 - 52981779
Alignment:
| Q |
185 |
tttaaagcctcaagtctatgtttgcggtgcaagaaacat |
223 |
Q |
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| T |
52981817 |
tttaaagcttcaagtctttgtttgcggtgcaagaaacat |
52981779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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