View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512_low_47 (Length: 239)
Name: NF4512_low_47
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_low_47 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 32482229 - 32482450
Alignment:
| Q |
18 |
attgaaagcgtgattaacgctgcttgctgccacgacactgtttagccgtctgtttctgttttctgtccttctttttcttattaacttcaattcaattcaa |
117 |
Q |
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| T |
32482229 |
attgaaagcgtgattaacgctgcttgctgccacgacactgtttagccgtctgtttctgttttctgtccttctttttcttattaacttcaattcaattcaa |
32482328 |
T |
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| Q |
118 |
ttactatactcttttcccaaccataacaaggagacatatacttatgttttcattttctctgtgttttgttttgtgtaattttctggagacgcacacaaaa |
217 |
Q |
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| T |
32482329 |
ttactatactcttttcccaaccataacaaggagacatatacttatgttttcattttctctgtgttttgttttgtgtaattttctggagacgcacacaaaa |
32482428 |
T |
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| Q |
218 |
cacggtatcccataaaccattt |
239 |
Q |
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| T |
32482429 |
cacggtatcccataaaccattt |
32482450 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 11308502 - 11308535
Alignment:
| Q |
183 |
ttgttttgtgtaattttctggagacgcacacaaa |
216 |
Q |
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| T |
11308502 |
ttgttttgtggaattttctggagacgcacacaaa |
11308535 |
T |
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