View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512_low_48 (Length: 239)
Name: NF4512_low_48
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_low_48 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 36424913 - 36424686
Alignment:
| Q |
18 |
aaaatactcctacatggaaaagcgataacatttattttaaaacaaatttcatttgttacaatgatagtcattgtgaaacacataaagtgtcaatg----- |
112 |
Q |
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| T |
36424913 |
aaaatactcctacatggaaaagcgataacatttattttaaaacaaatttcatttgttacaatgatagtcattgttaaacacataaagtgtcaatgtttaa |
36424814 |
T |
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| Q |
113 |
-ttttaagatctctgataaataaaactgatgagacnnnnnnnnaaacgactcttatgtttaatcaatcataaatttcatacacttatttaacattttatt |
211 |
Q |
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| T |
36424813 |
cttttaagatctctgataaataaaactgatgagacttttttttaaacgattcttatgtttaatcaatcataaattttatacacttatttaacattttatt |
36424714 |
T |
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| Q |
212 |
ttctctttatttctcttcctaccacacc |
239 |
Q |
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| T |
36424713 |
ttctctttatttctcttcctatcacacc |
36424686 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 19208388 - 19208356
Alignment:
| Q |
181 |
taaatttcatacacttatttaacattttatttt |
213 |
Q |
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| T |
19208388 |
taaatttcatacacttatttaacactttatttt |
19208356 |
T |
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