View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512_low_51 (Length: 236)
Name: NF4512_low_51
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_low_51 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 9 - 236
Target Start/End: Complemental strand, 39418065 - 39417838
Alignment:
| Q |
9 |
atcatcacttccttcaatggctgtacacccaggaaagatccagtgttcagcaggtttcagtgtgatgagttcacaatctcctaatcccaacattctagtg |
108 |
Q |
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| T |
39418065 |
atcatctcttccttcaatggctgtacacccaggaaagatccagtgttcagcaggtttcagtgtgatgagttcacaatctcctaatcccaacattctagtg |
39417966 |
T |
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| Q |
109 |
ggtgctgttgtcggaggaccagatcagcatgataggtttccagataaacggtcagattatgagcaatcagagccagcaacttatgttaatgcaccacttg |
208 |
Q |
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| T |
39417965 |
ggtgctgttgtcggaggaccagatcagcatgataggtttccagataaacggtcagattatgagcaatcagagccagcaacttatgttaatgcaccacttg |
39417866 |
T |
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| Q |
209 |
tagggacacttgcttatcttgcacactc |
236 |
Q |
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| T |
39417865 |
tagggacacttgcttatcttgcacactc |
39417838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 44513419 - 44513643
Alignment:
| Q |
9 |
atcatcacttccttcaatggctgtacacccaggaaagatccagtgttcagcaggtttcagtgtgatgagttcacaatctcctaatcccaacattctagtg |
108 |
Q |
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| T |
44513419 |
atcatcacttccatctattgctgttcaccctggcaagatccaatgttcagaaggattcagtgtaatggactcacaatcccctaaccccaacattctagtg |
44513518 |
T |
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| Q |
109 |
ggtgctgttgtcggaggaccagatcagcatgataggtttccagataaacggtcagattatgagcaatcagagccagcaacttatgttaatgcaccacttg |
208 |
Q |
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| T |
44513519 |
ggtacagttgttgggggacctgatttgcatgatagctttccagatgaacgttcagattatgagcaatcagagccagctacttacatcaatgcacctcttg |
44513618 |
T |
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| Q |
209 |
tagggacacttgcttatcttgcaca |
233 |
Q |
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| T |
44513619 |
taggagcattggcttatcttgcaca |
44513643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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