View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4512_low_54 (Length: 217)
Name: NF4512_low_54
Description: NF4512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4512_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 42843018 - 42843203
Alignment:
| Q |
15 |
cacagatgatttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaag |
114 |
Q |
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| T |
42843018 |
cacagatgatttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaag |
42843117 |
T |
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| Q |
115 |
cttcagctttcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaatt |
200 |
Q |
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| T |
42843118 |
cttcagctttcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaatt |
42843203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 200
Target Start/End: Original strand, 42819106 - 42819282
Alignment:
| Q |
24 |
tttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctt |
123 |
Q |
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| T |
42819106 |
tttattgtgggagattgacaatagaagttatgataagttgctcaaaaagtgcattgagaacgaggaagagctaagagttaccaatttaaagcttcaactt |
42819205 |
T |
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| Q |
124 |
tcggaagaagagaatataaagttgaaggttcaagttgagagtagtgagggtctgtttgatgatttatgtgaggaatt |
200 |
Q |
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| T |
42819206 |
tcggaaaaagaggttatcaacttgaaggttcaagttgagaacagcaagggtcagtttgataatgtgtgtgaagaatt |
42819282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 40 - 175
Target Start/End: Original strand, 42834318 - 42834453
Alignment:
| Q |
40 |
gacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaagaagagaata |
139 |
Q |
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| T |
42834318 |
gacaatagaagttatgatgatttgatcaaaaaaattattggaacggaggaagagctaagggttaccaattcaaagcttcgactttcagaagaagagaata |
42834417 |
T |
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| Q |
140 |
taaagttgaaggttcaagttgagagtagtgagggtc |
175 |
Q |
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| T |
42834418 |
taaagttgaaggtccaagttgggaatggtgagggtc |
42834453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 163
Target Start/End: Original strand, 12621799 - 12621939
Alignment:
| Q |
23 |
atttatcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagct |
122 |
Q |
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| T |
12621799 |
atttatcatgggagatggacaataaaagttatgatcaattgctcaaaaagttcaaagaaaatgaggaagagctaagagtttctaattttaaacttcagct |
12621898 |
T |
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| Q |
123 |
ttcggaagaagagaatataaagttgaaggttcaagttgaga |
163 |
Q |
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| T |
12621899 |
ttcggaacaagagattataaagttgaaagttcaagctgaga |
12621939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 12627682 - 12627828
Alignment:
| Q |
28 |
tcgtgggagatagacaatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcgg |
127 |
Q |
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| T |
12627682 |
tcgtgggagatggacaacggaacttatgatgagttgcttaaaaagtttaatgaaaaggaggaagagctaagaatttccaattttaaacttcaactttcaa |
12627781 |
T |
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| Q |
128 |
aagaagagaatataaagttgaaggttcaagttgagagtagtgagggt |
174 |
Q |
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| T |
12627782 |
aacaagaaactataaagttgaaggttgaaattgagaatagtgagggt |
12627828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 175
Target Start/End: Complemental strand, 30924849 - 30924717
Alignment:
| Q |
43 |
aatagaagttatgataatttgctcaaaaagttcatggaaaaggaggaagagctaagggttaccaatttaaagcttcagctttcggaagaagagaatataa |
142 |
Q |
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|||| |||||||||| | ||||| || |||||||| |||| |||||||||||| | ||| ||||||| || ||| ||||||| |||||||||| ||| | |
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| T |
30924849 |
aataaaagttatgatgaattgctgaagaagttcattaaaaacgaggaagagctacgagtttccaatttgaaacttaagctttcagaagaagagattatca |
30924750 |
T |
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| Q |
143 |
agttgaaggttcaagttgagagtagtgagggtc |
175 |
Q |
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| T |
30924749 |
agttgaagaatcaaaatgagaaaagtgagggtc |
30924717 |
T |
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